Locus 14458

Sequence ID dm3.chrX
Location 13,465,381 – 13,465,497
Length 116
Max. P 0.950404
window19902 window19903

overview

Window 2

Location 13,465,381 – 13,465,495
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.49
Shannon entropy 0.21144
G+C content 0.34997
Mean single sequence MFE -26.28
Consensus MFE -23.62
Energy contribution -22.82
Covariance contribution -0.80
Combinations/Pair 1.27
Mean z-score -1.88
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.53
SVM RNA-class probability 0.947170
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13465381 114 - 22422827
CUUUCGCAUUGGCAAACAUUCUUUCAUUCGCACACUUUGUUUGGCAU--UCGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGACAG
.....((..((.....)).....((((..(((((.((((((((.(((--((((..----...))))...))).)))))))).)))))..)))))).....((((.(.....).))))... ( -27.10, z-score =  -1.78, R)
>droSim1.chrX 10324190 114 - 17042790
CUUUUGCUUUGGCAAACAUUCUUUCAUUUGCACACUUUGUUUGGCAU--UCGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGACAG
..(((((....)))))......(((((..(((((.((((((((.(((--((((..----...))))...))).)))))))).)))))..)))))......((((.(.....).))))... ( -29.50, z-score =  -2.61, R)
>droSec1.super_20 97994 114 - 1148123
CUUUUGCUUUGGCAAACAUUUUUUCAUUUGCACACUUUGUUUGGCAU--UCGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGGCAG
....((((((((.((((((((.(((((..(((((.((((((((.(((--((((..----...))))...))).)))))))).)))))..))))).)))......)).))).)))))))). ( -33.60, z-score =  -3.54, R)
>droYak2.chrX 7746652 119 - 21770863
CUUUAGCUUU-GCAAACAUUCCUUUAUUCACACAUUUUGCUUGGCAUUCUCGAACUACAUAUUUAAUAAAUGGUAAAUAAAAUGUGUCUGUUAGCAAAUUUCUCUGAUUUCCUGAGACAG
.......(((-((.((((...........((((((((((.(((.((((....................)))).))).)))))))))).)))).)))))..((((.........))))... ( -18.85, z-score =  -0.62, R)
>droEre2.scaffold_4690 5331450 117 + 18748788
CUUUAGUAUU-GCAAACAUUCUUUUAUUCACACAUUUUGUUUGGCAU--UUGAACUGCAUAUUAAAUAAAUGGCAAGUAAAAUGUGUCUGUGAACAAAAUUCUCUGAUUUCCUGAGACAC
..........-...........(((((..((((((((((((((.(((--(((..............)))))).))))))))))))))..)))))......((((.........))))... ( -22.34, z-score =  -0.85, R)
>consensus
CUUUAGCUUUGGCAAACAUUCUUUCAUUCGCACACUUUGUUUGGCAU__UCGAAC____UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGACAG
.....((....)).........(((((..(((((.((((((((.(((..(((((.......)))))...))).)))))))).)))))..)))))......((((.(.....).))))... (-23.62 = -22.82 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 13,465,383 – 13,465,497
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.83
Shannon entropy 0.20543
G+C content 0.34131
Mean single sequence MFE -25.76
Consensus MFE -23.08
Energy contribution -22.28
Covariance contribution -0.80
Combinations/Pair 1.27
Mean z-score -1.92
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.56
SVM RNA-class probability 0.950404
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13465383 114 - 22422827
UUCUUUCGCAUUGGCAAACAUUCUUUCAUUCGCACACUUUGUUUGGCAUU--CGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGAC
.......((..((.....)).....((((..(((((.((((((((.((((--(((..----...))))...))).)))))))).)))))..)))))).....((((.(.....).)))). ( -27.10, z-score =  -1.97, R)
>droSim1.chrX 10324192 114 - 17042790
UUCUUUUGCUUUGGCAAACAUUCUUUCAUUUGCACACUUUGUUUGGCAUU--CGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGAC
....(((((....)))))......(((((..(((((.((((((((.((((--(((..----...))))...))).)))))))).)))))..)))))......((((.(.....).)))). ( -29.50, z-score =  -2.88, R)
>droSec1.super_20 97996 114 - 1148123
UUCUUUUGCUUUGGCAAACAUUUUUUCAUUUGCACACUUUGUUUGGCAUU--CGAAC----UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGGC
.......(((((((.((((((((.(((((..(((((.((((((((.((((--(((..----...))))...))).)))))))).)))))..))))).)))......)).))).))))))) ( -31.00, z-score =  -2.91, R)
>droYak2.chrX 7746654 119 - 21770863
UUCUUUAGCUUU-GCAAACAUUCCUUUAUUCACACAUUUUGCUUGGCAUUCUCGAACUACAUAUUUAAUAAAUGGUAAAUAAAAUGUGUCUGUUAGCAAAUUUCUCUGAUUUCCUGAGAC
.........(((-((.((((...........((((((((((.(((.((((....................)))).))).)))))))))).)))).)))))..((((.........)))). ( -18.85, z-score =  -0.87, R)
>droEre2.scaffold_4690 5331452 117 + 18748788
UUCUUUAGUAUU-GCAAACAUUCUUUUAUUCACACAUUUUGUUUGGCAUU--UGAACUGCAUAUUAAAUAAAUGGCAAGUAAAAUGUGUCUGUGAACAAAAUUCUCUGAUUUCCUGAGAC
............-...........(((((..((((((((((((((.((((--((..............)))))).))))))))))))))..)))))......((((.........)))). ( -22.34, z-score =  -0.95, R)
>consensus
UUCUUUAGCUUUGGCAAACAUUCUUUCAUUCGCACACUUUGUUUGGCAUU__CGAAC____UAUUUGAUAAAUGGCAAACAAAAUGUGUCUGUGAGCAAAUUUCUCUGAUUUCCCGAGAC
.......((....)).........(((((..(((((.((((((((.((((..((((.......))))...)))).)))))))).)))))..)))))......((((.(.....).)))). (-23.08 = -22.28 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:30 2011