| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,464,408 – 13,464,512 |
| Length | 104 |
| Max. P | 0.514430 |
| Location | 13,464,408 – 13,464,512 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Shannon entropy | 0.33941 |
| G+C content | 0.42771 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -10.27 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13464408 104 + 22422827 CUUAGCCCAUUCCUCAAAA-UGAAUUCGUGUGCCCAC-CAUAUGUACAAAUGUAUAUAUGUACUAUAUCUGUAUACUCAACGUAUAUCCCCCGGAUUCGACGCUAU ..((((..(((......))-)(((((((.........-(((((((((....)))))))))..........((((((.....))))))....)))))))...)))). ( -20.00, z-score = -2.23, R) >droSec1.super_20 97086 90 + 1148123 CUUAGCCCGUUCCUCCAAA-UGAAUUCAUGUGCCCAC-CCUACGUAUAUAU-------------AUAUCUGUAUACUCA-CGUAUAUCCCCCGGAUUCGACGCUAU ..((((.((.(((..((.(-((....))).)).....-..(((((.(((((-------------(....))))))...)-))))........)))..))..)))). ( -13.70, z-score = -1.14, R) >droEre2.scaffold_4690 5330594 99 - 18748788 CUUAGCCCAUUCCUCAAAAACAAAUUCAUGUGCCCCUUCCCCCAUACAUACGUGUGC-------ACAUAUGUAUACUGAAUGUGUAUCCCCUGGAUUCGACGCUAU ..((((....(((......(((.((((((((((.........(((((....))))).-------......))))).))))).))).......)))......)))). ( -16.91, z-score = -1.61, R) >consensus CUUAGCCCAUUCCUCAAAA_UGAAUUCAUGUGCCCAC_CCUACGUACAUAUGU_U_________AUAUCUGUAUACUCAACGUAUAUCCCCCGGAUUCGACGCUAU ..((((....(((..............((((((..........)))))).....................((((((.....)))))).....)))......)))). (-10.27 = -10.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:29 2011