| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,463,668 – 13,463,771 |
| Length | 103 |
| Max. P | 0.677649 |
| Location | 13,463,668 – 13,463,771 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.72 |
| Shannon entropy | 0.40950 |
| G+C content | 0.44109 |
| Mean single sequence MFE | -31.15 |
| Consensus MFE | -15.80 |
| Energy contribution | -17.18 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13463668 103 - 22422827 UCCAUUAUCACAAAUGAGCAUUUGAGC------------CUGUGGUGCUUAUCGAGUUAUCACUGUACUUAUUUAGUU-----GUAAGCGCCUGUCAUUUGCCGAGCAGCACAAGCAAAA ..........(((((....))))).((------------.((((.(((((..(((((...((..(..(((((......-----)))))..).))..)))))..))))).)))).)).... ( -25.30, z-score = -0.81, R) >droEre2.scaffold_4690 5329829 116 + 18748788 ACCAACGCCGCAAAUGAUUAGGUAUUA----UCAGGCGCCUUUUCCUCGUAGCGAGUCACCACUGUAGUUGUUAAGUUGUUUGGUAAGCGGCUGUCAUUUUCCGAGGAGCAAACACAAAG ......(((((...((((........)----))).))).....((((((((((((.(((....)).).))))))(((((((.....))))))).........)))))))).......... ( -25.40, z-score = 0.65, R) >droSec1.super_20 96348 115 - 1148123 UUCAUCAUCACAAAUGAGUAUUUGAGUAUUAUGAGUCGGCUGUGCCGCUUAUCGAGUGACCACUGUGCUUAUUUAGUU-----GUAAGCGCCUGUCAUUUGCCGAGCAGCACAAGCAAAA (((((.(((.(((((....))))).).)).)))))...(((((((.((((..((((((((....((((((((......-----))))))))..))))))))..)))).)))).))).... ( -38.00, z-score = -3.05, R) >droSim1.chrX 10322560 103 - 17042790 UUCAUCAUCACAAUUGAGUAUUUGCCU------------CUGUGCCGCUUAUCGAGUGACCACUGUGCUUAUUUAGUU-----GUAAGCGCCUGUCAUUUGCCGAGCAGCACAAGCAAAA ....(((.......)))...(((((..------------.(((((.((((..((((((((....((((((((......-----))))))))..))))))))..)))).))))).))))). ( -35.90, z-score = -4.26, R) >consensus UCCAUCAUCACAAAUGAGUAUUUGAGU____________CUGUGCCGCUUAUCGAGUGACCACUGUACUUAUUUAGUU_____GUAAGCGCCUGUCAUUUGCCGAGCAGCACAAGCAAAA ........................................(((((.((((..((((((((....((((((((...........))))))))..))))))))..)))).)))))....... (-15.80 = -17.18 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:28 2011