| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,461,007 – 13,461,097 |
| Length | 90 |
| Max. P | 0.587138 |
| Location | 13,461,007 – 13,461,097 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.40 |
| Shannon entropy | 0.45539 |
| G+C content | 0.48141 |
| Mean single sequence MFE | -17.04 |
| Consensus MFE | -11.00 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13461007 90 - 22422827 -------UCCACCAACA-U-UUUCCAUUGCCCAAAAUGGAUUCACA---------------CCAUCGGCUGUCAUAGCCAGUGGUUUCCCCUUGAGAACUUCCACUUCAACUUC -------..........-.-..((((((......)))))).....(---------------((((.(((((...))))).)))))......(((((.........))))).... ( -17.70, z-score = -1.71, R) >droEre2.scaffold_4690 5327396 96 + 18748788 CACACCACCCCUUU---------CCAUUGCCCAAAAUGGAUUCACACCUGAGAAGAGCGCGCCAUCAGUUGUCAUACCCAGUGGUUUCCCCUUGAGAACUUCAAC--------- ...(((((.....(---------(((((......))))))...(((.((((...(....)....)))).)))........)))))....................--------- ( -16.40, z-score = -0.16, R) >droYak2.chrX 7742394 106 - 21770863 AACACCACCCCCUUCUAUCGCUGCCAUUGCCCAAAAUGGAUUCACACCU--GAACAACCCGCCAUCGGCUGUCAUACCCAGUGGUUUCCCCUUGAGAACUUCAACAUC------ ................((((((((((((......))))).........(--((.((..(((....))).)))))....))))))).......................------ ( -14.40, z-score = 0.61, R) >droSec1.super_20 93831 95 - 1148123 ---UUUACCCACCGACAUU-UUUCCAUUGCCCAAAAUGGAUUCACA---------------CCAUCGGCUGUCAUAGCCAGUGGUUUCCCCUUGAGAACUUCCACUUCAACUUC ---................-..((((((......)))))).....(---------------((((.(((((...))))).)))))......(((((.........))))).... ( -17.70, z-score = -1.56, R) >droSim1.chrX_random 3643014 96 - 5698898 --CUUUAUCAACCACCAUU-UUUCCAUUGCCCAAAAUGGAUUCACA---------------CCAUCGGCUGUCAUAGCCAGUGGUUUCCCCUUGAGAACUUCCACUUCAACUUC --.....((((........-..((((((......)))))).....(---------------((((.(((((...))))).)))))......))))................... ( -19.00, z-score = -2.21, R) >consensus __CACCACCCACCAACAUU_UUUCCAUUGCCCAAAAUGGAUUCACA_______________CCAUCGGCUGUCAUAGCCAGUGGUUUCCCCUUGAGAACUUCCACUUCAACUUC .......................(((((......)))))......................((((.(((((...))))).)))).............................. (-11.00 = -11.60 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:27 2011