| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,444,418 – 13,444,507 |
| Length | 89 |
| Max. P | 0.532193 |
| Location | 13,444,418 – 13,444,507 |
|---|---|
| Length | 89 |
| Sequences | 3 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 86.47 |
| Shannon entropy | 0.18572 |
| G+C content | 0.30946 |
| Mean single sequence MFE | -14.37 |
| Consensus MFE | -11.32 |
| Energy contribution | -10.55 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13444418 89 + 22422827 CAGUCCGUUUGAAAUGCACUGAACGAAAAGGGGUAGUGCAACACAAAAUAAGAAAUUUAAUAUAAAGUGAUAUUUUUGGGAAAAUUUAA ...(((........(((((((..(......)..)))))))...(((((......((((......)))).....))))))))........ ( -16.00, z-score = -1.74, R) >droSim1.chrX_random 3626202 88 + 5698898 CAGUCCGUCUGAAAUGCACUGAAAAAAAAGUGGUAGUGUAACACAAAAUAAGAAAUUAAAUAAAAAGUGAUAUUCCUGGAAAAAUUAG- ...((((...(((...((((.........(((.........)))....(((....))).......))))...))).))))........- ( -10.70, z-score = -0.99, R) >droSec1.super_20 77360 88 + 1148123 CAGUCCGUCUGAAAUGCACUGAAAAAAAAGUGGUAGUGCAACACAAAACAAGAAAUUAAGUAAAAAAUGAUAUUCUUGGAAAACUGAG- ((((...((.....(((((((..(......)..)))))))........((((((((((.........)))).))))))))..))))..- ( -16.40, z-score = -2.20, R) >consensus CAGUCCGUCUGAAAUGCACUGAAAAAAAAGUGGUAGUGCAACACAAAAUAAGAAAUUAAAUAAAAAGUGAUAUUCUUGGAAAAAUUAG_ ...((((...(((.(((((((..(......)..))))))).(((......................)))...))).))))......... (-11.32 = -10.55 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:26 2011