Locus 14452

Sequence ID	dm3.chrX
Location	13,428,169 – 13,428,235
Length	66
Max. P	0.967943

overview

Window 5

Location	13,428,169 – 13,428,235
Length	66
Sequences	5
Columns	70
Reading direction	forward
Mean pairwise identity	70.12
Shannon entropy	0.52328
G+C content	0.47707
Mean single sequence MFE	-20.42
Consensus MFE	-11.60
Energy contribution	-12.56
Covariance contribution	0.96
Combinations/Pair	1.41
Mean z-score	-1.77
Structure conservation index	0.57
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.79
SVM RNA-class probability	0.967943
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13428169 66 + 22422827
UUUUGGUGGCAAGAAAGUGUAGCCACAUCGGGCAGCUCUGGUUCUGA----AGAGCCGUCUGAUAAGGAA
.....(((((...........)))))(((((((.(((((........----))))).)))))))...... ( -24.50, z-score =  -2.65, R)
>droPer1.super_17 1428200 68 - 1930428
UUUGGGUGGCAAGAGGGUGU-GCUGGACCGAUGGCAUUUUUUUUUGGUGUUGGAACAGCCUUAGGGGAC-
((((((..(((......)))-((((..((((((.((........)).))))))..))))))))))....- ( -16.00, z-score =  -0.13, R)
>droEre2.scaffold_4690 5295254 66 - 18748788
AUUUAUUGGCCAGAAAGCGCAGCCAAAUCAGUCAGCUCUGAUUCUGC----AGAGCAGUCUGAUAAGGAC
.....(((((..(....)...)))))(((((.(.((((((......)----))))).).)))))...... ( -20.60, z-score =  -1.83, R)
>droSec1.super_20 61409 66 + 1148123
UUUUGGUGGCAAGAAAGUGUAUCUACAUCGGGCAGCUCUGAUUCUGA----AGAGCAGUCUGAUAAGGAA
(((((....))))).......(((..(((((((.(((((........----))))).)))))))..))). ( -19.00, z-score =  -1.60, R)
>droSim1.chrX 10303540 65 + 17042790
AUUUGGUGGU-AAGAAGUGUAGCCACAUCGGGCAGCUCUGUUUCUGA----AGAGCAGUCUGAUAAGGAA
.....(((((-..........)))))(((((((.(((((........----))))).)))))))...... ( -22.00, z-score =  -2.61, R)
>consensus
UUUUGGUGGCAAGAAAGUGUAGCCACAUCGGGCAGCUCUGAUUCUGA____AGAGCAGUCUGAUAAGGAA
.....(((((...........)))))(((((((.(((((............))))).)))))))...... (-11.60 = -12.56 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:24 2011