| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,427,257 – 13,427,381 |
| Length | 124 |
| Max. P | 0.578694 |
| Location | 13,427,257 – 13,427,381 |
|---|---|
| Length | 124 |
| Sequences | 4 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.27569 |
| G+C content | 0.45959 |
| Mean single sequence MFE | -33.15 |
| Consensus MFE | -26.81 |
| Energy contribution | -25.75 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13427257 124 - 22422827 UCAGACUCCAGACUCCGGGCUCCGGACUCCGGACAUCAGCUGGUAUUCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGAGAUAUGA- ......(((.((.(((((...))))).)).)))(((...(((....((((((((..(((((((..(((((....)))))..))))))....)..))))))))((......)).)))....))).- ( -37.70, z-score = -1.21, R) >droEre2.scaffold_4690 5294389 111 + 18748788 --------------UCACACUCCAGACUCCGGACUCCAGCUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUUCCCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAGAAUGA --------------(((..((((.((..((((.(....)))))..))(((((((..(((((((..(((((....)))))..))))))....)..)))))))...............))))..))) ( -36.40, z-score = -2.18, R) >droYak2.chrX 7708107 105 - 21770863 --------------UCGGAUUCCUGACUUCAGACUUCAGCUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUACUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGC------ --------------......(((((...((((.(....)))))....(((((((..((((((((.(((((....))))).)))))))....)..)))))))............))))).------ ( -30.10, z-score = -1.67, R) >droSec1.super_20 60511 110 - 1148123 --------------UCAGACUCCAGACUCCGGACUUCAGCUGGUAUCCAUAGCACCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGA- --------------...((..((((.((.........))))))..))((((...(((((((((..(((((....)))))..))))))...((((......))))...........))).)))).- ( -28.40, z-score = 0.00, R) >consensus ______________UCAGACUCCAGACUCCGGACUUCAGCUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGA_ ...................(((..((..((((.(....)))))..))(((((((..(((((((..(((((....)))))..))))))....)..)))))))..............)))....... (-26.81 = -25.75 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:23 2011