| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,422,251 – 13,422,359 |
| Length | 108 |
| Max. P | 0.567080 |
| Location | 13,422,251 – 13,422,359 |
|---|---|
| Length | 108 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.74 |
| Shannon entropy | 0.59244 |
| G+C content | 0.63306 |
| Mean single sequence MFE | -50.35 |
| Consensus MFE | -21.59 |
| Energy contribution | -21.19 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.74 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13422251 108 - 22422827 CUGGGUGAUGCAAUGGCCGGCUGUCGCC-UGGUGAAU---------GGCGUGGUGGCCAAGGGGGCAAAGGCGGUGGCCAGCUGGUCGCCCAGAAGUUGCUUCAGUUGCUCCCGCAUC ......(((((..((((((.(...((((-........---------)))).).)))))).((((((((..(.(((((((....)))))))).((((...))))..))))))))))))) ( -53.60, z-score = -2.16, R) >droSim1.chrX 10297450 108 - 17042790 CUGGGUGAUGCAAUGGCCGGCUGCCGCC-UGCUGAAU---------GGCGUGGUGGCCAAGGGGGCAAAGGCGGUGGCCAGCUGGUCACCCAGAAGCUGCUUCAGUUGCUCCCGCAUC ......(((((..((((((.(..(.(((-........---------))))..))))))).((((((((..(.((..((...((((....))))..))..)).)..))))))))))))) ( -54.50, z-score = -1.56, R) >droSec1.super_20 55040 108 - 1148123 UUGGGUGAUGCAAUGGCCGGCUGGCGCC-UGCUGAAU---------GGCGUGGUGGCCAAGGGGGCAAAGGCGGUAGCCAGCUGGUCGCCCAGAAGCUGCUUCAGUUGCUCCCGCAUC ......(((((..((((((.(..(((((-........---------)))))).)))))).((((((((..(.((((((...((((....))))..)))))).)..))))))))))))) ( -56.60, z-score = -2.32, R) >droYak2.chrX 7703413 108 - 21770863 CUGGGUGACGCAAUGGCCGGCUGCCGCC-UGGUGAAU---------GGCGUGGUGCCCAGGGGGGCAAAGGCGGUGGCCAGUUGGUCGCCCAGAAGCUGCUUCAGUUGCUCCCGCAUC (((((((((.(((((((((.((((((((-........---------)))....(((((....)))))..))))))))))).)))))))))))).(((((...)))))((....))... ( -56.40, z-score = -1.84, R) >droEre2.scaffold_4690 5289776 111 + 18748788 CUGGGUGAUGCAAUGGCCGGCUGCCGCC-UGGUGAAUGG------CGGCGUAGUGGCCAAGGGGGCAAAAGCGGUUGCCAGUUGGUUGCCCAGAAGCUGUUUCAGUUGCUCCCGCAUC ......(((((..((((((..(((((((-........))------)))))...)))))).((((((((((((((((.....((((....)))).))))))))...))))))))))))) ( -53.50, z-score = -2.21, R) >droAna3.scaffold_13248 2397245 117 - 4840945 GUGGGUGCCACAAUCGCAGGCUGCCGCUGGGCCAGGUUC-GAAAAGGGCGUGGUCGCCAGUGGGGCAAAGGCGUUGGCCAACUGCUCGCCGAGUAACUGCUUCAACUGCUCCCGCAUC (((((.((.......(((((((.(((((((((((.((((-.....)))).))))..))))))))))...((((..(((.....)))))))......)))).......)).)))))... ( -52.54, z-score = -1.14, R) >dp4.chrXL_group1e 8951921 117 + 12523060 GUGGGUGCCACAAUGCCCGGCCUGCGCU-GGCUAAGCUGUGAGAUGGGUGUCGUCGCCAAUGGGGCAAAGGCGUUGGCCAGCUGUUCUCCCAGCAGCUGCUUUAUCCGUCCCCUCAUU (.(((...((((..((..((((......-))))..)))))).((((((((.....(((((((.........)))))))((((((((.....))))))))...))))))))))).)... ( -44.10, z-score = 0.51, R) >droPer1.super_17 1422793 117 + 1930428 GUGGGUGCCACAAUGCCCGGCCUGCGCU-GGCUAAGCUGUGAGAAGGGUGUCGUGGCCAAUGGGGCAAAGGCGUUGGCCAGCUGUUCUCCCAGCAGCUGCUUUAUCCGUCCCCUCAUU (((((.(((((.((((((..(..(((((-.....))).))..)..)))))).)))))....(((((...(((....)))(((((((.....))))))).........)))))))))). ( -47.60, z-score = -0.16, R) >droWil1.scaffold_180702 3330424 105 - 4511350 CCGGGUGCCACAAUGGCCGGCUGACGU----CUCAGCUC---------UCCAGUUGUCAAUGGGGCAAAGGCAUUGGUCAAUUGAUCGGCCAAUAGUUUUUUCAGUUCUUCCCUCAUC ..(((.(((....(((..((((((...----.)))))).---------.))).(((((.....))))).)))(((((((........)))))))................)))..... ( -31.80, z-score = -1.03, R) >droVir3.scaffold_9517 862 117 - 4334 CUGGGCGCCACAACGGCCGGCUGGCGGC-GGCUUAGGACCGCCAAUGGCGUCGCCGUCAACGGUGCCACAGCGCCAGUCAGCUGUUGCCCUAGCACUUGCCUAAGCUGUUCCCGCGUG ..(((((((.....)))(((((((((((-(((....).)))))..(((((((((((....))))).....))))))))))))))..))))((((..........)))).......... ( -52.90, z-score = -0.33, R) >consensus CUGGGUGACACAAUGGCCGGCUGCCGCC_UGCUGAAU_________GGCGUGGUGGCCAAGGGGGCAAAGGCGGUGGCCAGCUGGUCGCCCAGAAGCUGCUUCAGUUGCUCCCGCAUC ..(((.(.......(((.((((((((((...........................(((.....)))...))))))))))..(((......))).....))).......).)))..... (-21.59 = -21.19 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:22 2011