| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,312,951 – 11,313,063 |
| Length | 112 |
| Max. P | 0.567582 |
| Location | 11,312,951 – 11,313,063 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.71 |
| Shannon entropy | 0.16371 |
| G+C content | 0.30619 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -16.70 |
| Energy contribution | -16.53 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11312951 112 - 23011544 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAACCCAAAGC----- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...........----- ( -18.40, z-score = -1.35, R) >droSim1.chr2L 11116710 112 - 22036055 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAACCCAAUGC----- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...........----- ( -18.40, z-score = -1.09, R) >droSec1.super_3 6710001 112 - 7220098 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAACCCAAUGC----- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...........----- ( -18.40, z-score = -1.09, R) >droYak2.chr2L 7710226 112 - 22324452 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAACCCACUGC----- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...........----- ( -18.40, z-score = -1.06, R) >droEre2.scaffold_4929 12511385 112 + 26641161 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAGCCCAAUGC----- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...........----- ( -18.40, z-score = -0.90, R) >droAna3.scaffold_12916 12032552 113 + 16180835 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCACAAAAACCCAAGC------ -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))............------ ( -18.40, z-score = -1.34, R) >droPer1.super_1 8200119 112 - 10282868 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCACAAAAACCCAAA------- -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))...........------- ( -18.40, z-score = -1.50, R) >dp4.chr4_group3 6751018 113 - 11692001 -CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCACAAAAACCCAAAA------ -.....(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))............------ ( -18.40, z-score = -1.51, R) >droWil1.scaffold_181038 224036 105 + 637489 UCCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCAAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCACAAG--------------- ......(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))...--------------- ( -18.40, z-score = -1.86, R) >droVir3.scaffold_12963 18001918 116 + 20206255 -CCCCACGUCAAAAUGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUGUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAGCACAACGACUGC- -......(((....((..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--...))....)))...- ( -21.00, z-score = -0.93, R) >droMoj3.scaffold_6500 4949912 109 + 32352404 -CCCCACGUCAAAAUCAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC--AAGCUCAA-------- -.................(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....)))))))--........-------- ( -17.60, z-score = -0.89, R) >droGri2.scaffold_15126 7119053 117 + 8399593 -CCCCACGUCAAAAUGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUUGAAAAUCAAUAAAUAAGAAAAUCAC--AAGUCAAACAACAACA -...(((.((.....)).))).....((.((((.((.((((.......(((.(((....))).))).((((((((.(....).))))))))..)))).))))--)).))........... ( -19.20, z-score = -0.76, R) >consensus _CCCCACGUCAAAACGAGGUGAUUUAGAAUUGUCGAAUUUUAUUUAAAUUGGAUGCAAACAUGCGAAAUUUAUUGUAGAAAAUCAAUAAAUAAGAAAAUCAC__AAACCCAAUG______ ......(((....)))..(((((((......(((.(((((.....))))).)))(((....)))...((((((((........))))))))....))))))).................. (-16.70 = -16.53 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:05 2011