| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,421,152 – 13,421,252 |
| Length | 100 |
| Max. P | 0.753592 |
| Location | 13,421,152 – 13,421,252 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.39096 |
| G+C content | 0.41838 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -14.07 |
| Energy contribution | -11.75 |
| Covariance contribution | -2.31 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13421152 100 + 22422827 UUUUCCUUGCGAGUGUUUGUAUUCCCAUCUAGGCAUUCCUAAAGGAAUCCUU-AGGACUUUAUACCGAAGGGUAUUGUGUGUGAGGAUUUGUGAGUAUCUG .....((..(((((.((..(((.....((((((.(((((....))))).)))-)))((...(((((....))))).)))))..)).)))))..))...... ( -30.80, z-score = -2.91, R) >droSim1.chrX 10296296 92 + 17042790 AUUUACUCGAGGAUUUCUG-AGGACUAUCUAGGGAUUCCUUAAGGAAUCCUUAGGGUUUUUGUACUGAAGGUUA--GUGUGUGAGGAUUUGCGAG------ .....((((..((((..((-((((((..(((((((((((....)))))))))))))))))).((((((...)))--)))...)..))))..))))------ ( -29.80, z-score = -2.61, R) >droSec1.super_20 53906 81 + 1148123 AUUUCCUCGAGGAUUUCUG-GGGACUAUCUAGGGAUUCCUUA-----------GGGUUUUUGUACUGAAGGUUA--GUGUGUGAGAAUUUGCGAG------ ....(((..(((((..(((-((.....)))))..).))))..-----------)))((((..(((.........--..)))..))))........------ ( -21.40, z-score = -0.66, R) >consensus AUUUCCUCGAGGAUUUCUG_AGGACUAUCUAGGGAUUCCUUAAGGAAUCCUU_GGGUUUUUGUACUGAAGGUUA__GUGUGUGAGGAUUUGCGAG______ .....((((.(((((((((.(......).)))))))))...............((((((((((((.............)))))))))))).))))...... (-14.07 = -11.75 + -2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:21 2011