| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,404,333 – 13,404,423 |
| Length | 90 |
| Max. P | 0.525087 |
| Location | 13,404,333 – 13,404,423 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 65.80 |
| Shannon entropy | 0.62017 |
| G+C content | 0.54157 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -9.64 |
| Energy contribution | -9.25 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13404333 90 - 22422827 ---UUAUGAGGUGGAUUCCAUGUCCUGGACCCAUUG-UUUCUCCGUUUCGCGGUUCCAU-AUGCGCAGGGCCUGCAAUGUGGUUCAGAAUCACCA ---......(((((((.....)))((((((((((((-(...(((....((((.......-.))))..)))...)))))).)))))))...)))). ( -30.90, z-score = -1.74, R) >droSim1.chrX_random 3611700 90 - 5698898 ---UUAUGAGGUGGAUCCCGUGUCCUGGACCCAUUG-UUUCUCCGUUUCGCGGUUCCAU-AUGCGCAGGGGCUGCAAUGUGGUCCAGGAUCACCA ---......((((........(((((((((((((((-(..((((....((((.......-.))))..))))..)))))).)))))))))))))). ( -41.40, z-score = -3.77, R) >droSec1.super_20 37405 90 - 1148123 ---UUAUGAGGUGGAUCCCGUGUCCUGGACCCAUUG-UUUCUCCGUUUCGCGGUUCCAU-AUGCGCAGGGGCUGCAAUGUGGUCCAGGAUCACCA ---......((((........(((((((((((((((-(..((((....((((.......-.))))..))))..)))))).)))))))))))))). ( -41.40, z-score = -3.77, R) >droYak2.chrX 7683600 73 - 21770863 ---UUAUGAGAUGGAUGCCGUGUCCUGGGCCCAUUGUUUUCCCCGUUUCGUGGCUCCAA-AUGGGCCAGGAUCACCU------------------ ---................(((((((((.((((((.....((.((...)).)).....)-))))))))))).)))..------------------ ( -24.70, z-score = -0.95, R) >droEre2.scaffold_4690 5272841 71 + 18748788 ---GUAUGAGGUGGAUCCCGUGUCCUGGGCCCAUUG-UUUCCCCGUUUCGUGGUUCCAU-AUGCA-AAGGAUCAUCU------------------ ---.....(((((.((((..(((..(((..((((..-............))))..))).-..)))-..)))))))))------------------ ( -19.54, z-score = -0.50, R) >droAna3.scaffold_13248 2379733 86 - 4840945 GCAUUAUGCCGAGGAGCCUUUGACCCG--CCCAUUG-UCUAACCAGGUCAAAGUUCCAUCGUGCUUCGGGUUUUCGGGGUGGCUGGUCU------ .......((((((((((.(((((((..--.......-........)))))))))))).))..(((((((....))))))))))......------ ( -25.83, z-score = 0.26, R) >consensus ___UUAUGAGGUGGAUCCCGUGUCCUGGACCCAUUG_UUUCUCCGUUUCGCGGUUCCAU_AUGCGCAGGGACUGCAAUGUGGU_CAG_A______ .........(((((.(((........))).)))))..............((((..((..........))..)))).................... ( -9.64 = -9.25 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:20 2011