| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,398,820 – 13,398,918 |
| Length | 98 |
| Max. P | 0.684903 |
| Location | 13,398,820 – 13,398,918 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.17 |
| Shannon entropy | 0.18116 |
| G+C content | 0.41883 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -15.78 |
| Energy contribution | -16.54 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13398820 98 + 22422827 GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCAAGCAGCGGAGAAGUUGAACAUCAGCGCAUUAUAUCAUUAGAUUUGAUAAAGUCA .((((((.((.(((((((.....))))))).((........))..))))))))...((((.....))))..............(((((....))))). ( -19.00, z-score = -1.48, R) >droSim1.chrX_random 3605358 98 + 5698898 GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCGAGCAGCGGAGAAGUUGAACAUCAGCGCAUUAGAUCAUUAGAUUUGAUAAAGUCA .((((((.((((((((((.....))))))).((........))).))))))))((.((((.....))))..((((((((....))))))))....)). ( -21.90, z-score = -2.13, R) >droSec1.super_20 32011 98 + 1148123 GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCAAGCAGCGGAGAAGUUGAACAUCAGCGCAUUAGAUCAUUAGAUUUGAUAAAGUCA .((((((.((.(((((((.....))))))).((........))..))))))))((.((((.....))))..((((((((....))))))))....)). ( -21.40, z-score = -2.29, R) >droYak2.chrX 7673093 98 + 21770863 GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCAAGCAGCAGAGAAGUUGAACAUCAGCGCGUUAGAUCAUUAGAUUUGAUAAAGUCA ....(((.((.(((((((.....))))))).((........))..)))))...((.((((.....))))..((((((((....))))))))....)). ( -18.00, z-score = -1.51, R) >droEre2.scaffold_4690 5268459 98 - 18748788 GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCAGGCAGCGGAGAAGUUGAACAUCAGCGCAUUAGAUCAUUAGAUUUGAUAAAGUCA .((((((.((((((((((.....))))))).((........)).)))))))))((.((((.....))))..((((((((....))))))))....)). ( -25.60, z-score = -3.33, R) >dp4.chrXL_group1e 8927098 94 - 12523060 GUUCGUUAGCUGUAAAUAACAGUUAUUUGCAGGGAG----CCCAGCCAGAGCGAAAGUUGAGCAUCAACGCAUUAGAUCAUCAGAUUUGAUAAAGUCA .((((((.((((((((((.....))))))).((...----.)))))...)))))).((((.....))))..((((((((....))))))))....... ( -23.80, z-score = -2.46, R) >droPer1.super_17 1397420 94 - 1930428 GUUCGUUAGCUGUAAAUAACAGUUAUUUGCAGGGAG----CCCAGCCAGAGCGAAAGUUGAGCAUCAACGCAUUAGAUCAUCACAUUUGAUAAAGUCA .((((((.((((((((((.....))))))).((...----.)))))...)))))).((((.....))))......(((.((((....))))...))). ( -20.40, z-score = -1.24, R) >consensus GUUCGUUAGCCGUAAAUAACAGUUAUUUGCAGGACAUCCCCCCAAGCAGCGGAGAAGUUGAACAUCAGCGCAUUAGAUCAUUAGAUUUGAUAAAGUCA .((((((.((.(((((((.....))))))).((........))..))))))))...((((.....))))..((((((((....))))))))....... (-15.78 = -16.54 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:19 2011