| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,376,285 – 13,376,363 |
| Length | 78 |
| Max. P | 0.638602 |
| Location | 13,376,285 – 13,376,363 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Shannon entropy | 0.36320 |
| G+C content | 0.34695 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -10.46 |
| Energy contribution | -9.88 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13376285 78 - 22422827 UUUUUGCGACAAAUAUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUGGAGAACAUAAAAACAUAAAA (((((((((((((........)))))))).((..((((((.....))))))..))...)))))............... ( -14.60, z-score = -1.24, R) >droSim1.chrX 10265513 71 - 17042790 UUUUUGCGACAAAUUUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUUGAGAACAUAAAAA------- .....((((((((........)))))))).((..((((((.....))))))..))................------- ( -14.50, z-score = -1.35, R) >droSec1.super_20 9681 71 - 1148123 UUUUUGAGACAAAUUUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUGGAGAACAUAAAAA------- ((((..(((((((........))))(((((..((((....))))..)))))..)))..)))).........------- ( -15.90, z-score = -1.58, R) >droYak2.chrX 7650526 71 - 21770863 UUUUUGCGACAAAUAUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUGGAGAACAUAAAAA------- (((((((((((((........)))))))).((..((((((.....))))))..))...)))))........------- ( -14.60, z-score = -1.36, R) >droEre2.scaffold_4690 5246278 71 + 18748788 UCUUUGCGACAAAUAUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUGGAGAACAUAAAAG------- (((((((((((((........)))))))).((..((((((.....))))))..))..))))).........------- ( -16.90, z-score = -2.08, R) >droAna3.scaffold_13248 2495814 66 + 4840945 UCCUUGCCGUAAAGGUUAUCCUUACUCUUUCAUAGCCCUU-UUAAAGGUAGAAUCCUGGAAAACACG----------- ((((((((..(((((((((............)))).))))-)....)))))......))).......----------- ( -8.90, z-score = 0.31, R) >consensus UUUUUGCGACAAAUAUCGUCCUUUGUCGCUGACAUCAUUUGAUGAAAGUGAAAUCUUGGAGAACAUAAAAA_______ ...............((.(((....(((((..((((....))))..)))))......)))))................ (-10.46 = -9.88 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:18 2011