| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,367,987 – 13,368,056 |
| Length | 69 |
| Max. P | 0.913246 |
| Location | 13,367,987 – 13,368,056 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 73.02 |
| Shannon entropy | 0.54077 |
| G+C content | 0.48290 |
| Mean single sequence MFE | -19.41 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13367987 69 - 22422827 -AUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGUCA--GUCGU -........((..((((((((...(((((((....))))).))...))))))))..)).......--..... ( -22.00, z-score = -1.71, R) >droSim1.chrX 10255893 69 - 17042790 -AUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGUCA--GUCGU -........((..((((((((...(((((((....))))).))...))))))))..)).......--..... ( -22.00, z-score = -1.71, R) >droSec1.super_318 13099 69 - 14619 -AUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGUCA--GUCGG -........((..((((((((...(((((((....))))).))...))))))))..)).......--..... ( -22.00, z-score = -1.61, R) >droYak2.chrX 7642476 72 - 21770863 AGUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGUCAGUGUCGU .........((..((((((((...(((((((....))))).))...))))))))..)).............. ( -22.00, z-score = -1.17, R) >droEre2.scaffold_4690 5238276 69 + 18748788 -AUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGCCA--GCCGU -..(((....(((((((......)))).)))...))).......((((((((((.....))).))--))))) ( -22.80, z-score = -1.11, R) >droWil1.scaffold_180702 1231469 68 + 4511350 --UGUGUGUUGUUUAGGAGUAAAGUGCAGUUUUAAGCUUGUCAAACGGCUUCAAUC--GAUAUCAGAGUCGU --((.((((((.((.(((((....((((((.....)).)).))....))))))).)--)))))))....... ( -10.30, z-score = 0.60, R) >droGri2.scaffold_15203 9171427 64 + 11997470 -CUGUUUGGAGACUUGU-GCUAAGCACUGGUGAUGCCAUCCGAAUUGAUUGCCAUU--GGCGUUA-AGU--- -(.(((((((.....((-((...))))(((.....)))))))))).)...(((...--)))....-...--- ( -14.80, z-score = -0.25, R) >consensus _AUGUUCAAUGCUGCGCGGCUAAGUGCAAGUUUAAACUUGUCAAACGGCUGCGCUCCAAGUGUCA__GUCGU .............((((((((...(((((((....))))).))...)))))))).................. (-13.61 = -14.04 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:15 2011