| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,341,848 – 13,341,905 |
| Length | 57 |
| Max. P | 0.541928 |
| Location | 13,341,848 – 13,341,905 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 88.05 |
| Shannon entropy | 0.20416 |
| G+C content | 0.47449 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -11.26 |
| Energy contribution | -11.46 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13341848 57 + 22422827 UUUCGCAUGCUGUGCAGCCAUCUCUCUCU----AUCGGUGGCUGACAAAGUUUUGCAUUAU ....(((.(((.((((((((((.......----...)))))))).)).)))..)))..... ( -20.20, z-score = -3.72, R) >droEre2.scaffold_4690 5218457 61 - 18748788 UUUCAUGCGUUGUGCAGCCGUCUCUCUCUCUCUAUUGGUGGCUGACAAAGUUUUGCAUUAU ....(((((((((.(((((..(..............)..))))))))).....)))))... ( -15.14, z-score = -1.87, R) >droYak2.chrX 7621326 57 + 21770863 UUUCGUGCGCCGUGCAGCCAUCUCUCUCU----AUUGGUGGCCGACAAACUUUUGCAUUAU ....(((((...(((.((((((.......----...)))))).).))......)))))... ( -12.50, z-score = -0.64, R) >droSec1.super_21 1094723 57 + 1102487 UUUCGCAGGCUGUGCAGCCGUCUCUCUCU----AUCGGUGGCUGACAAAGUUUUGCAUUAU ....(((((((.(((((((..(.......----...)..))))).)).)).)))))..... ( -17.60, z-score = -1.99, R) >droSim1.chrX 10235319 57 + 17042790 UUUCGCUGGCUGUGCAGCCGUCUCUCUCU----AUCGGUGGCUGACAAAGUUUUGCAUUAU ....((.((((.(((((((..(.......----...)..))))).)).))))..))..... ( -16.70, z-score = -1.81, R) >consensus UUUCGCACGCUGUGCAGCCGUCUCUCUCU____AUCGGUGGCUGACAAAGUUUUGCAUUAU ....((..(((.((((((((((..............)))))))).)).)))...))..... (-11.26 = -11.46 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:14 2011