| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,338,922 – 13,339,037 |
| Length | 115 |
| Max. P | 0.878626 |
| Location | 13,338,922 – 13,339,037 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.32 |
| Shannon entropy | 0.46265 |
| G+C content | 0.49639 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -21.43 |
| Energy contribution | -22.18 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.878626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13338922 115 + 22422827 CACUUCGGCUGCUUUCGGCCAUCGCCUCGUAUUCCCACUCACUCGACAUUGAGCGUUUGUGGAGCAUCCUCAGAGAUGCCAAAUAUUUUGGGGGGGAAAAAAAGCUGAAAAUAAU--- ...(((((((..(((((((....))).......(((.((((.......(((.((((((.(((.......))).)))))))))......)))))))))))...)))))))......--- ( -32.62, z-score = -0.78, R) >droSim1.chrX 10230299 111 + 17042790 CACUUCGGCUGCCUUCGGCCAUCGCCUCGUAUUCCCACUCACUCGACAUUGAGCGUUUGUGGAGCAUCCUCAGAGAUGCCAAAUAUUU----GGGGGGAAAACGCUGAAAACAUU--- ...((((((.......(((....)))..((.(((((.((((.......(((.((((((.(((.......))).))))))))).....)----)))))))).))))))))......--- ( -32.70, z-score = -0.93, R) >droSec1.super_21 1091765 112 + 1102487 CACUUCGGCUGCCGUCGGCCAUUGCCUCGUAUUCCCACUCACUCGACAUUGAGCGUUUGUGGAGCAUCCUCAGAGAUGCCAAAUAUUU---GGGGGGGAAAAAGCCGAAUAUAAU--- ...(((((((..((..(((....))).))..(((((.....(((.(((.........))).)))...(((((((.((.....)).)))---)))))))))..)))))))......--- ( -34.60, z-score = -0.90, R) >droYak2.chrX 7618188 112 + 21770863 CACUUCGGCUGCCCUCGGCAAUCGCCUCGUAUUCCCACUCACUCGACUUCGAGUGCCUGUGGAGCAUCGCCAGUGAUGCCAAAUGUUU---GGGGGGAAAAAAGCUGAAAAUAAU--- ...(((((((.((((((((....)))........((((.((((((....))))))...)))).((((((....)))))).........---.))))).....)))))))......--- ( -43.20, z-score = -3.51, R) >droEre2.scaffold_4690 5215333 112 - 18748788 CACUUCGGCUGCCCUCGGCCAUCGCCUCGUGUUUCCACUCACUCGACAUUGAGUCUUUGUGGAGCAUCCCCAGUGAUGCGAAAUGUUU---GGGGGGAAAAAGGCUGAAAAUAAU--- ...(((((((.((((((((....)))((.....(((((..(((((....)))))....)))))(((((......))))))).......---.))))).....)))))))......--- ( -37.80, z-score = -1.54, R) >droAna3.scaffold_13248 2311822 97 + 4840945 -----CGGAAUCACUCGGUUCCCGCUUCGGUUUUCCACUCACUCACUAGUGAUGCUCUG------AUUU-----GAGUUUAAAU--UU---GGCGGAAAAAUGGCUAGAUUUUUUGAC -----.((((((....)))))).(((....((((((..(((((....))))).(((..(------((((-----(....)))))--).---)))))))))..)))............. ( -24.40, z-score = -1.18, R) >consensus CACUUCGGCUGCCCUCGGCCAUCGCCUCGUAUUCCCACUCACUCGACAUUGAGCGUUUGUGGAGCAUCCUCAGAGAUGCCAAAUAUUU___GGGGGGAAAAAAGCUGAAAAUAAU___ ...(((((((......(((....))).....(((((.(((.((((....))))..........(((((......)))))............))))))))...)))))))......... (-21.43 = -22.18 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:13 2011