Locus 14440

Sequence ID dm3.chrX
Location 13,332,635 – 13,332,749
Length 114
Max. P 0.820151
window19881

overview

Window 1

Location 13,332,635 – 13,332,749
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 84.80
Shannon entropy 0.20138
G+C content 0.37656
Mean single sequence MFE -25.50
Consensus MFE -21.10
Energy contribution -20.33
Covariance contribution -0.77
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.820151
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13332635 114 + 22422827
GGGAUAUAAGCGUAUAAUAAUGCGGUUAGUUUCGAAAAGCGCUUUUUAUGUGCGUACAUAUGCAUAUUUUAGUCAACACCCAAGCACUUACUGCUGUUGAGCCAAAAUAAUCCU
(((((....((((((.......(((......)))....((((.......))))....)))))).((((((.(((((((.....(((.....))))))))).).))))))))))) ( -25.20, z-score =  -0.47, R)
>droSim1.chrX 10224059 101 + 17042790
GGGUUUUAAGCGUAUUAUAAUGCGGUUAGCUUCGAAAACCGUUUUUUAUGUGCAUACACAUGCAUAU-------------CAAGCACUUACUGCAGCUGAACCAAAAUAAUCCU
(((((....((((......))))((((((((................((((((((....))))))))-------------...(((.....)))))))).))).....))))). ( -24.30, z-score =  -1.79, R)
>droSec1.super_21 1083689 101 + 1102487
GGAUUUUAAGCGUAUUAUAAUGCGGUUAGCUUCGAAAACCGCUUUUUAUGUGCAUACACAUGCAUAU-------------CAAGCACUUACUGCAGCUGAACCAAAAUAAUCCU
(((((....((((......))))((((((((.((......((((...((((((((....))))))))-------------.))))......)).))))).))).....))))). ( -27.00, z-score =  -3.11, R)
>consensus
GGGUUUUAAGCGUAUUAUAAUGCGGUUAGCUUCGAAAACCGCUUUUUAUGUGCAUACACAUGCAUAU_____________CAAGCACUUACUGCAGCUGAACCAAAAUAAUCCU
(((((....((((......))))(((((((.................((((((((....))))))))................(((.....))).))).)))).....))))). (-21.10 = -20.33 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:12 2011