| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,325,444 – 13,325,534 |
| Length | 90 |
| Max. P | 0.561305 |
| Location | 13,325,444 – 13,325,534 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.93 |
| Shannon entropy | 0.36019 |
| G+C content | 0.37321 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -7.70 |
| Energy contribution | -7.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13325444 90 + 22422827 CAUUUUCGAGCGAAAUUC----UCCCAUCCAGCCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGAGUUCCUAGCUUG-AAGCUUAUACCUUCCCAC ...((((((((......(----((..........(((((((((((....)))))))))))..)))......)))))-)))............... ( -16.80, z-score = -2.00, R) >droSim1.chrX 10216815 89 + 17042790 CAUUUUCGUG-GAAAUUC----UCCCAUCCAGCCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGAGUUCCCAGCUUGGAAGUUUAUACCUUCC-AC .......(((-(((....----............(((((((((((....)))))))))))(((((((((......)))).)))))...))))-)) ( -18.80, z-score = -1.95, R) >droSec1.super_21 1076520 89 + 1102487 CAUUUUCGUG-GAAAUUC----UCCCAUCCAGCCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGAGUUCCUAGCUUGGAAGUUUAUACCUUCC-AC .......(((-(((....----............(((((((((((....)))))))))))(((((((((......)))).)))))...))))-)) ( -20.00, z-score = -2.37, R) >droEre2.scaffold_4690 5202232 75 - 18748788 -------------CAUUU----UCGUAUCCACGCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGUGUUCCCAUUUUG--AACUUAUACCUUCC-AC -------------.....----.......((((.(((((((((((....))))))))))).))))...........--..............-.. ( -12.20, z-score = -2.59, R) >droYak2.chrX 7603792 93 + 21770863 CAUUUUCCAGGAAAUUUUCGCAUCGUAUCCAUGCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGAGUUUCCACUUUC--AAUUUAUGCUAUCCCAC .........((((((((..((((.......))))(((((((((((....)))))))))))..))))))))......--................. ( -17.90, z-score = -2.36, R) >consensus CAUUUUCGAG_GAAAUUC____UCCCAUCCAGCCUGAUUAGAUUGAUCGCAAUUUAAUUAAUGAGUUCCCAGCUUG_AAGUUUAUACCUUCC_AC ..................................(((((((((((....)))))))))))................................... ( -7.70 = -7.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:11 2011