| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,304,832 – 13,304,927 |
| Length | 95 |
| Max. P | 0.733551 |
| Location | 13,304,832 – 13,304,927 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 61.33 |
| Shannon entropy | 0.68867 |
| G+C content | 0.35437 |
| Mean single sequence MFE | -16.02 |
| Consensus MFE | -6.85 |
| Energy contribution | -6.05 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13304832 95 - 22422827 CCGAUUUUGCUUAAGCUCAAAGUCAGAAGCUGAGUAAACAGGGUUCAUAGGCCCGUUUUA-UUGCAUUUUCCUUACAGCGUUUACAAUUUACAAUU ..(((((((........))))))).........((((((.((((......))))((....-..))..............))))))........... ( -18.10, z-score = -0.77, R) >droWil1.scaffold_181096 3590518 74 + 12416693 ------------------ACAGUCGACUGCACUAU-AACAAAUUUUAAACUAUGGUCAUGAAUCUAUAUAACUCUGUAUGGAUUUAAGUAAUA--- ------------------.(((....))).(((((-(.............))))))..((((((((((((....)))))))))))).......--- ( -12.82, z-score = -1.66, R) >droEre2.scaffold_4690 5183148 94 + 18748788 -CAGAUUUUGCUUAGCUCAAAGUCGGAUGAUGAAUAAAUAGGGUUCAAAGGCCCGUUUAG-UUGUAUUUACCUUACAGCGUUCACAAUUUACAAUU -..(((((((.......)))))))((((..(((((.....((((......)))).....(-(((((.......)))))))))))..))))...... ( -21.40, z-score = -1.92, R) >droYak2.chrX 7583931 91 - 21770863 UGGAUUUUGCUGAAGCUCAAAGUCGGAUGCUGAAUAAACAGGGUUCAUAGGCGCGUUUAAUUUGUGUUUUCCUAACAGCGCUCACAAUUUG----- ..(((((((........)))))))((((.(((......))).))))...((((((((................))).))))).........----- ( -18.69, z-score = 0.57, R) >droSec1.super_21 1057185 76 - 1102487 -------------------AAGUCAGAAGCUGAGUAAACAGGGUUCAUAGGCCCGUUAAA-UUGCAUUUUCCUUACAGUUUUUACAAUUUACAAUU -------------------..((.((((((((........((((......))))((....-..))..........))))))))))........... ( -14.80, z-score = -1.86, R) >droSim1.chrX 10197122 76 - 17042790 -------------------AAGUCAGAAGCUGAGUAAACAGAGUUCAUAGGCCCGUUAAA-UUGCAUUUUCCUUACAGCUUUUACAAUUUACAAUU -------------------..((.((((((((........(.((......)).)((....-..))..........))))))))))........... ( -10.30, z-score = -0.35, R) >consensus __________________AAAGUCAGAAGCUGAAUAAACAGGGUUCAUAGGCCCGUUAAA_UUGCAUUUUCCUUACAGCGUUUACAAUUUACAAUU .....................((.((((((((........((((......))))((.......))..........))))))))))........... ( -6.85 = -6.05 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:09 2011