| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,300,546 – 13,300,619 |
| Length | 73 |
| Max. P | 0.832473 |
| Location | 13,300,546 – 13,300,619 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 80.85 |
| Shannon entropy | 0.36708 |
| G+C content | 0.50761 |
| Mean single sequence MFE | -20.76 |
| Consensus MFE | -14.17 |
| Energy contribution | -13.90 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13300546 73 - 22422827 UCGGAGUCUUUAACCUCCACAAGGUUGUC-UUGUUGCCUCCAC--UCGC--GUG-CAGCGACGACUCUGA-UUUCUAAGC ((((((((..((((((.....))))))..-..(((((...(((--....--)))-..)))))))))))))-......... ( -24.20, z-score = -2.80, R) >droSim1.chrX 10192855 73 - 17042790 UCGGAGUCUUUAACCUCCACAAGGUUGUC-UUGUUGCCUCCAC--UCGC--GUG-CAGCGACGACUCUGA-UUUCUAAGC ((((((((..((((((.....))))))..-..(((((...(((--....--)))-..)))))))))))))-......... ( -24.20, z-score = -2.80, R) >droSec1.super_21 1052978 73 - 1102487 UCGGAGUCUUUAACCUCCACAAGGUUGUC-UUGUUGCCUCCAC--UCGC--GUG-CAGCGACGACUCUGA-UUUCUAAGC ((((((((..((((((.....))))))..-..(((((...(((--....--)))-..)))))))))))))-......... ( -24.20, z-score = -2.80, R) >droYak2.chrX 7579696 75 - 21770863 UUGGAGUCUUUAACCUCCACAAGGUUGUC-UUGUUGCCACCAC--UCGCAAAUG-CAGCGACGACUCUGA-UUUCUAAGC .(((((........)))))((..((((((-(((((((......--..)))...)-))).))))))..)).-......... ( -19.60, z-score = -1.63, R) >droAna3.scaffold_13248 1267870 71 - 4840945 UCGAAGUCUUUAACCUCCACAAGGUUGUCUCUGUU--CAUCGAAAU-GCAGUCG-----ACCGACU-UGAUUUUCUAAGC ((.(((((...(((((.....)))))(((.((((.--.........-))))..)-----)).))))-))).......... ( -13.50, z-score = -0.42, R) >dp4.chrXL_group3a 2214087 80 + 2690836 UCGGAGUCUUUAACCUCCACAAGGUUGUCGCCGUCGCCGUCGUCGUAGCCGUUGCCUGCAUUGACUCUGAUUUUCUAAGC ((((((((..((((((.....))))))..((.(.((.((.(......).)).)).).))...)))))))).......... ( -19.80, z-score = -0.63, R) >droPer1.super_39 720485 80 + 745454 UCGGAGUCUUUAACCUCCACAAGGUUGUCGCCGUCGCCGUCGUCGUAGCCGUUGCCUGCAUUGACUCUGAUUUUCUAAGC ((((((((..((((((.....))))))..((.(.((.((.(......).)).)).).))...)))))))).......... ( -19.80, z-score = -0.63, R) >consensus UCGGAGUCUUUAACCUCCACAAGGUUGUC_UUGUUGCCUCCAC__UCGC__GUG_CAGCGACGACUCUGA_UUUCUAAGC ((((((((..((((((.....))))))........((...((..........))...))...)))))))).......... (-14.17 = -13.90 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:07 2011