| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,299,720 – 13,299,853 |
| Length | 133 |
| Max. P | 0.747919 |
| Location | 13,299,720 – 13,299,853 |
|---|---|
| Length | 133 |
| Sequences | 4 |
| Columns | 154 |
| Reading direction | reverse |
| Mean pairwise identity | 63.55 |
| Shannon entropy | 0.53441 |
| G+C content | 0.31002 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -8.09 |
| Energy contribution | -9.15 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747919 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 13299720 133 - 22422827 UUGAAUCAAGAAUAAUA----UAUAGUAUGUACAUAUAU-------UGUAUAUUUUUGAAACCCAUAUUUGAG----------UUUGUAGUUUGUUUGCCCUGCGAUAAAAGCGUGAAUAGAAGGCAAUUAGCCGGUUUUCUUUUUUUUUUUUG ......((((((.((((----(((((((((....)))))-------))))))))...((((.((.........----------.......((((((..(.((........)).)..)))))).(((.....))))).)))).......)))))) ( -26.10, z-score = -1.70, R) >droSim1.chrX 10192081 107 - 17042790 UUGAAUCAAGAAUAAUA----UA-------UACAUAGUA-------UGUAUAUUUUUGAAACCCAUAU----------------------UUCGUUUGCCCUCCGAUAAAAGCGUGAAUAGAAGGCAAUUAGCCGGUUUUUUUUUAG------- .....(((((((((.((----((-------(((...)))-------)))))))))))))((((..(((----------------------(((((((............))))).)))))...(((.....))))))).........------- ( -22.40, z-score = -2.57, R) >droSec1.super_21 1052232 108 - 1102487 UUGAAUCAAGAAUAAUA----UA-------UACAUAGUA-------UGUAUAUUUUUGAAACCCAUAU----------------------UUUGUUUGCCCUGCGAUAAAAGCGUGAAUAGAAGGCAAUUAGCCGGUUUUUUUUUUAG------ .....(((((((((.((----((-------(((...)))-------)))))))))))))((((....(----------------------((((((..(.((........)).)..)))))))(((.....)))))))..........------ ( -26.40, z-score = -3.68, R) >droEre2.scaffold_4690 5177995 143 + 18748788 UAGCACCAAUAGUUAUAGUACUGUACCAAGUAUCUAUCAUUAUCUUUAUAUCUUUUUGAACCACAUACGCUAGAAAUACCAAAUUUUCAAUUCGCUUGUCUUGCCAACAUCAGGCG-AUAGAAGGCAAUUAGGUGGCUUUUUAG---------- ...((((.(((((.((((((((......)))).)))).))))).........................(((.((((........))))...(((((((...((....)).))))))-).....))).....)))).........---------- ( -27.40, z-score = -1.26, R) >consensus UUGAAUCAAGAAUAAUA____UA_______UACAUAGUA_______UGUAUAUUUUUGAAACCCAUAU______________________UUCGUUUGCCCUGCGAUAAAAGCGUGAAUAGAAGGCAAUUAGCCGGUUUUUUUUUU________ .........................................................((((((...........................(((((((((.((........)).))))))))).(((.....))))))))).............. ( -8.09 = -9.15 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:06 2011