| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,297,143 – 13,297,248 |
| Length | 105 |
| Max. P | 0.624962 |
| Location | 13,297,143 – 13,297,248 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.71 |
| Shannon entropy | 0.29256 |
| G+C content | 0.56660 |
| Mean single sequence MFE | -35.23 |
| Consensus MFE | -24.90 |
| Energy contribution | -25.93 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13297143 105 + 22422827 AGAGCGGGGCUCCACUGCCCAGCGGCCACGUGGCCUCCAAGGACCAGAACGUGAAUACAUUGAGCAAAUCGAUCCUUGGCGAGGUACUAAGAAAAGCCUUUAAUG ...((.((((......)))).))((((....)))).(((((((.......((....)).((((.....))))))))))).(((((..........)))))..... ( -32.40, z-score = -0.84, R) >droSim1.chrX 6651798 89 + 17042790 ----CGGGGCUCCACUGCCCAGC-----------CUCCAAGG-CCAGAACAUGGAUACAUUGAGCAAAUCAAUCCUUGGCGGGGCACUGAGAAAAGCCGUUUAUG ----..((((......))))..(-----------(.((((((-(((.....)))....(((((.....))))))))))).))(((..........)))....... ( -28.20, z-score = -0.66, R) >droSec1.super_35 209676 94 + 471130 ----CGGGGCUCCACUGCCCAGCGGCCACGUGGCCUCCAAGG-CCAGAACAUGGAUACAUUGAGCAAAUCAAUCCUUGGCGGGGCAU------GAGCCCUGUAUG ----((((((((...(((((.((((((....))))..(((((-(((.....)))....(((((.....)))))))))))).))))).------)))))))).... ( -45.10, z-score = -3.38, R) >consensus ____CGGGGCUCCACUGCCCAGCGGCCACGUGGCCUCCAAGG_CCAGAACAUGGAUACAUUGAGCAAAUCAAUCCUUGGCGGGGCACU_AGAAAAGCCCUUUAUG .....((((((....(((((.((((((....))))..(((((.(((.....)))....(((((.....)))))))))))).)))))........))))))..... (-24.90 = -25.93 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:05 2011