| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,271,166 – 13,271,225 |
| Length | 59 |
| Max. P | 0.903139 |
| Location | 13,271,166 – 13,271,225 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 63.64 |
| Shannon entropy | 0.62345 |
| G+C content | 0.34546 |
| Mean single sequence MFE | -6.29 |
| Consensus MFE | -3.16 |
| Energy contribution | -3.28 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903139 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 13271166 59 + 22422827 ACAUGGCGCAACUUGCAUUGUUUCGCCUCUCAAAAAAAAAAAAAAAACACACAAUAUCA ....((((.(((.......))).))))................................ ( -8.40, z-score = -2.07, R) >droSim1.chrX 10161467 51 + 17042790 ACUUGGCGCAAUUUGCAUUGUUCCGCCUCUCAAAAAAAAAA--------CACAAUAUCA ....((((.(((.......))).))))..............--------.......... ( -6.40, z-score = -0.83, R) >droSec1.super_21 1024483 50 + 1102487 ACUUGGCGCAAUUUGCAUUGUUCCGCCUCUCAAAAAAAAA---------UACACUAUCA ....((((.(((.......))).)))).............---------.......... ( -6.40, z-score = -1.07, R) >droAna3.scaffold_13335 2467952 50 - 3335858 ACAUGGCGCAAUUUACAUUA-UUUAGCCACAAAAACACAUAAACA--CAAACA------ ...((((.............-....))))................--......------ ( -4.23, z-score = -1.64, R) >droVir3.scaffold_12932 513671 57 + 2102469 ACAUGACGGAACGUACAACGGCUUGUCCAUAAAAAAAAAAAAAAA--CACUUUUUAUCA ....(((((..((.....))..)))))..................--............ ( -6.00, z-score = -0.61, R) >consensus ACAUGGCGCAAUUUGCAUUGUUUCGCCUCUCAAAAAAAAAAAA_A__CACACAAUAUCA ....((((.(((.......))).))))................................ ( -3.16 = -3.28 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:58 2011