| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,267,230 – 13,267,325 |
| Length | 95 |
| Max. P | 0.969338 |
| Location | 13,267,230 – 13,267,325 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 69.23 |
| Shannon entropy | 0.46283 |
| G+C content | 0.44675 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -15.05 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13267230 95 - 22422827 AACCCAAUUGCACUCGCCGCAAGGCGCGCAUUUCAAAACUGCAAUCGAGCAUUUCUUAUCAGAGUUUUGGGGCUUUGCACAAGCAACUGCAAAGC------------------- ..(((((....(((((((....)))..............(((......)))..........)))).)))))((((((((........))))))))------------------- ( -31.00, z-score = -2.46, R) >droEre2.scaffold_4690 5146184 112 + 18748788 -AACCAAAUGCACUCGCCGCAAGGCGCGCACUUUAAAAGUGCAAUCAAGCAUUUCGUAUCUGAGUUUU-CGGUUUUCCAAAAACAACAAAGUUUACGAUAAAUGUAUGUAUGUG -...((.(((((..((((....)))).(((((.....)))))......((((((((((.((..(((((-.((....)).))))).....))..)))))..))))).))))).)) ( -29.80, z-score = -2.76, R) >droYak2.chrX 7547774 86 - 21770863 AACCCCGAUGCACUCGUCGCAAGGCGCGCAUUUCAAAACUGCAACUAUGCAUUUCUUAUCUGAGUUUC-CGAUACUGCAAAAUAUAC--------------------------- ......(((((...((((....)))).)))))...............((((.....((((.(.....)-.)))).))))........--------------------------- ( -14.80, z-score = -0.37, R) >droSim1.chrX 10157552 94 - 17042790 AACCCAAAUGCAAUCGCCGCAAGGCGCGCAUUUCAAAACUGCAUUCGAGCAUUUCUUAUCAGAGUUUC-GGGCUUUGCACAAACAACUGCAAAGC------------------- ...((((((((...((((....)))).))))))..(((((((......)))..(((....))))))).-))((((((((........))))))))------------------- ( -28.10, z-score = -2.64, R) >consensus AACCCAAAUGCACUCGCCGCAAGGCGCGCAUUUCAAAACUGCAAUCAAGCAUUUCUUAUCAGAGUUUC_CGGCUUUGCAAAAACAACUGCAAAGC___________________ .....((((((...((((....)))).(((.........)))......)))))).....(((((((....)))))))..................................... (-15.05 = -15.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:57 2011