Locus 14424

Sequence ID dm3.chrX
Location 13,247,650 – 13,247,737
Length 87
Max. P 0.655086
window19857 window19858

overview

Window 7

Location 13,247,650 – 13,247,737
Length 87
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 85.42
Shannon entropy 0.27439
G+C content 0.55241
Mean single sequence MFE -32.08
Consensus MFE -21.48
Energy contribution -22.90
Covariance contribution 1.42
Combinations/Pair 1.09
Mean z-score -1.90
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.35
SVM RNA-class probability 0.655086
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13247650 87 + 22422827
AUGAAAAGGCGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGGA----
.......((((((.....(((...(((((((..(..(((......)))..)...)))))))..)))((((....))))))))))...---- ( -35.20, z-score =  -2.43, R)
>droSim1.chrX 10139936 87 + 17042790
AUGAAAAGGCGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGGA----
.......((((((.....(((...(((((((..(..(((......)))..)...)))))))..)))((((....))))))))))...---- ( -35.20, z-score =  -2.43, R)
>droSec1.super_21 1002465 87 + 1102487
AUGAAAAGGCGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGGA----
.......((((((.....(((...(((((((..(..(((......)))..)...)))))))..)))((((....))))))))))...---- ( -35.20, z-score =  -2.43, R)
>droYak2.chrX 7527406 90 + 21770863
AUGAAAAG-CGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGCCUGGA
......((-((((.....(((...(((((((..(..(((......)))..)...)))))))..)))((((....))))))))))....... ( -35.20, z-score =  -2.15, R)
>droEre2.scaffold_4690 5122498 86 - 18748788
AUGAAAUG-CGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGGA----
.......(-((((.....(((...(((((((..(..(((......)))..)...)))))))..)))((((....)))))))))....---- ( -33.80, z-score =  -2.07, R)
>droPer1.super_25 1365854 70 + 1448063
AUGGGAAGGCG--CAGAAA---GAGUCCAUCUGGCUGACAUCUA------------UGGGCAUCGAGUACACAUGUCUGUGGAUAGA----
...(...(((.--((((..---.......)))))))..)(((((------------(((((((.(......)))))))))))))...---- ( -17.90, z-score =   0.14, R)
>consensus
AUGAAAAGGCGACCACAAUCGUGGGGCCAUCUGGCUGACAUCGACGUCUACAUCGAUGGCCAUCGAGGACACAUGUCCGUCGCUGGA____
.........(((((((....))))(((((((..(..(((......)))..)...))))))).))).((((....))))............. (-21.48 = -22.90 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 13,247,650 – 13,247,737
Length 87
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 85.42
Shannon entropy 0.27439
G+C content 0.55241
Mean single sequence MFE -30.65
Consensus MFE -20.90
Energy contribution -23.48
Covariance contribution 2.58
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.15
SVM RNA-class probability 0.565133
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13247650 87 - 22422827
----UCCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCGCCUUUUCAU
----.....(((.((((....))))))).((((((((((((....))))))))...))))((.(((.((((....))))..)))...)).. ( -34.40, z-score =  -2.38, R)
>droSim1.chrX 10139936 87 - 17042790
----UCCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCGCCUUUUCAU
----.....(((.((((....))))))).((((((((((((....))))))))...))))((.(((.((((....))))..)))...)).. ( -34.40, z-score =  -2.38, R)
>droSec1.super_21 1002465 87 - 1102487
----UCCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCGCCUUUUCAU
----.....(((.((((....))))))).((((((((((((....))))))))...))))((.(((.((((....))))..)))...)).. ( -34.40, z-score =  -2.38, R)
>droYak2.chrX 7527406 90 - 21770863
UCCAGGCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCG-CUUUUCAU
....(((..(((.((((....))))))).((((.(((((((....)))))))))))))).((.(((.((((....))))..)-))..)).. ( -35.10, z-score =  -1.85, R)
>droEre2.scaffold_4690 5122498 86 + 18748788
----UCCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCG-CAUUUCAU
----....(((((((((....))))(((.(((.((((((((....))))))))...(((....))).)))))).....))))-)....... ( -34.20, z-score =  -2.22, R)
>droPer1.super_25 1365854 70 - 1448063
----UCUAUCCACAGACAUGUGUACUCGAUGCCCA------------UAGAUGUCAGCCAGAUGGACUC---UUUCUG--CGCCUUCCCAU
----..........(((((.(((...........)------------)).))))).((((((.......---..))))--.))........ ( -11.40, z-score =   0.61, R)
>consensus
____UCCAGCGACGGACAUGUGUCCUCGAUGGCCAUCGAUGUAGACGUCGAUGUCAGCCAGAUGGCCCCACGAUUGUGGUCGCCUUUUCAU
.........(((.((((....))))))).((((((((((((....))))))))...))))((.(((.((((....))))..)))...)).. (-20.90 = -23.48 +   2.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:54 2011