| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,245,182 – 13,245,300 |
| Length | 118 |
| Max. P | 0.989084 |
| Location | 13,245,182 – 13,245,300 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.68 |
| Shannon entropy | 0.07427 |
| G+C content | 0.35382 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -26.62 |
| Energy contribution | -27.02 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13245182 118 + 22422827 GUUUUUGGCCGGAAUAUUGGCUUACAUGAGAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACAUAUAUAUUGUAGUACUUAUGUA-- ......((((((....))))))(((((((((..((((........((((((......))))))......(((((((..((.....)).))))))).......))))..).))))))))-- ( -29.00, z-score = -2.59, R) >droEre2.scaffold_4690 5120036 112 - 18748788 -GUUUUGGCCGGAAUAUUGGCUUACAUGAAAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACGUAUAUA-----GUACUUAUGUA-- -.....((((((....))))))(((((((....(((.((......((((((......))))))......(((((((..((.....)).))))))))).))).-----....)))))))-- ( -26.60, z-score = -2.32, R) >droYak2.chrX 7524789 115 + 21770863 GUUUUUGGCCGGAAUAUUGGCUUACAUGAAAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACAUGUAUA-----GUACUUAUGUACA ......((((((....))))))(((((..................((((((......))))))......(((((((..((.....)).))))))))))))..-----((((....)))). ( -27.70, z-score = -2.37, R) >droSec1.super_21 1000094 113 + 1102487 GUUUUUGGCCGGAAUAUUGGCUUACAUGAGAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACAUAUAUA-----GUACUUAUGUA-- ......((((((....))))))((((((((...............((((((......))))))......(((((((..((.....)).))))))).......-----...))))))))-- ( -28.60, z-score = -2.93, R) >droSim1.chrX 10136145 113 + 17042790 GUUUUUGGCCGGAAUAUUGGCUUACAUGAGAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACAUAUAUA-----GUACUUAUGUA-- ......((((((....))))))((((((((...............((((((......))))))......(((((((..((.....)).))))))).......-----...))))))))-- ( -28.60, z-score = -2.93, R) >consensus GUUUUUGGCCGGAAUAUUGGCUUACAUGAGAAGAUAAACAGAAGAGCUCUCGACUAUGAGAGCAUAAAAGUUGGUUAACUAAUGAAGGGACUAACAUAUAUA_____GUACUUAUGUA__ ......((((((....))))))((((((((...............((((((......))))))......(((((((..((.....)).)))))))...............)))))))).. (-26.62 = -27.02 + 0.40)
| Location | 13,245,182 – 13,245,300 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.68 |
| Shannon entropy | 0.07427 |
| G+C content | 0.35382 |
| Mean single sequence MFE | -18.54 |
| Consensus MFE | -16.80 |
| Energy contribution | -16.84 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13245182 118 - 22422827 --UACAUAAGUACUACAAUAUAUAUGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUCUCAUGUAAGCCAAUAUUCCGGCCAAAAAC --.(((((.(((......))).))))).........(((.((......(((......((((((......))))))......)))......)).)))...(((........)))....... ( -17.70, z-score = -1.34, R) >droEre2.scaffold_4690 5120036 112 + 18748788 --UACAUAAGUAC-----UAUAUACGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUUUCAUGUAAGCCAAUAUUCCGGCCAAAAC- --(((((..(.((-----((.......)))).)...............(((......((((((......))))))......))).........))))).(((........)))......- ( -17.40, z-score = -1.54, R) >droYak2.chrX 7524789 115 - 21770863 UGUACAUAAGUAC-----UAUACAUGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUUUCAUGUAAGCCAAUAUUCCGGCCAAAAAC .((((....))))-----..((((((..((..........((((....)))).....((((((......))))))............))...)))))).(((........)))....... ( -21.80, z-score = -2.60, R) >droSec1.super_21 1000094 113 - 1102487 --UACAUAAGUAC-----UAUAUAUGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUCUCAUGUAAGCCAAUAUUCCGGCCAAAAAC --(((((.((.((-----((.......)))).................(((......((((((......))))))......)))......)).))))).(((........)))....... ( -17.90, z-score = -1.60, R) >droSim1.chrX 10136145 113 - 17042790 --UACAUAAGUAC-----UAUAUAUGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUCUCAUGUAAGCCAAUAUUCCGGCCAAAAAC --(((((.((.((-----((.......)))).................(((......((((((......))))))......)))......)).))))).(((........)))....... ( -17.90, z-score = -1.60, R) >consensus __UACAUAAGUAC_____UAUAUAUGUUAGUCCCUUCAUUAGUUAACCAACUUUUAUGCUCUCAUAGUCGAGAGCUCUUCUGUUUAUCUUCUCAUGUAAGCCAAUAUUCCGGCCAAAAAC ....................((((((..((..........((((....)))).....((((((......))))))............))...)))))).(((........)))....... (-16.80 = -16.84 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:53 2011