Locus 14422

Sequence ID dm3.chrX
Location 13,242,824 – 13,242,904
Length 80
Max. P 0.957557
window19854

overview

Window 4

Location 13,242,824 – 13,242,904
Length 80
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 81.21
Shannon entropy 0.26550
G+C content 0.39220
Mean single sequence MFE -22.00
Consensus MFE -13.77
Energy contribution -13.33
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -2.79
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.64
SVM RNA-class probability 0.957557
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13242824 80 - 22422827
GCGCGAGUGAGCGCCAUCGAUUCGAUUUGAUGGCAACAUUUUUGGAAAAC----------CCAUUCCAUAUU----ACAGUUCUAUUCUUUUAU
....((((((((((((((((......))))))))........(((((...----------...)))))....----...)))).))))...... ( -23.60, z-score =  -3.79, R)
>droSim1.chrX 10133890 94 - 17042790
GCGCGAGUGAGCGCAAUCGAUUCGAUUCGAUGACAACAUUUUCGAAAAACCAUUCGAAUUCUAUUCCAUAUUCCGCUCAUUUACACUCUUUUAU
..(..((((((((..(((((......))))).........((((((......))))))...............))))))))..).......... ( -22.10, z-score =  -2.71, R)
>droSec1.super_21 997767 94 - 1102487
GCGCGAGUGAGCGCAAUCGAUUCGAUUCGAUGACAACAUUUUCGAAAAACCAUUCGAAUUCUAUUCCAUAUUCCAUUCAUUUGCACUCUUUUAU
..(((((((((.(..(((((......)))))..)......((((((......)))))).................))))))))).......... ( -20.30, z-score =  -1.88, R)
>consensus
GCGCGAGUGAGCGCAAUCGAUUCGAUUCGAUGACAACAUUUUCGAAAAACCAUUCGAAUUCUAUUCCAUAUUCC__UCAUUUACACUCUUUUAU
((((......))))......(((((...((((....)))).)))))................................................ (-13.77 = -13.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:51 2011