| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,242,549 – 13,242,639 |
| Length | 90 |
| Max. P | 0.939644 |
| Location | 13,242,549 – 13,242,639 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 66.02 |
| Shannon entropy | 0.65280 |
| G+C content | 0.56645 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -10.32 |
| Energy contribution | -11.14 |
| Covariance contribution | 0.82 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13242549 90 + 22422827 UUAACCAAAACCCAUCGCCCCCUCAACACUCCGCU------GUCACCUCCACGCCUUUUGGCCCAAAAGUUAACAUUGCGUGCAUGCAGCUCGACU ................................(((------(.((....(((((...(((((......)))))....)))))..))))))...... ( -14.30, z-score = -1.13, R) >droSim1.chrX 10133611 89 + 17042790 UUAACCAACACCCAUCGUACCCCGCGCCCCGCCC-------GCUGUCACCACGCCUUUUGGCCCAAAAGUUAACAUUGCGUGCAUGCAGCUCGACU ..............(((......(((...)))..-------(((((...(((((...(((((......)))))....)))))...))))).))).. ( -18.50, z-score = -1.05, R) >droSec1.super_21 997490 90 + 1102487 UUAACCAACACCCAUCGUACCCCGCACCCCGCCCC------GCUGUCACCACGCCUUUUGGCCCAAAAGUUAACAUUGCGUGCAUGCAGCUCGACU ..............(((......((.....))...------(((((...(((((...(((((......)))))....)))))...))))).))).. ( -17.70, z-score = -1.40, R) >droYak2.chrX 7522202 94 + 21770863 UUAACCAAGCGACAUCCUUGCCCGCCCACCGCCCCCCGCCCGCUGUCACCACGCCUUUUGGC--AAAAGUUAACAUUGCGUGCAUGCAGCUCGACU ........(((.((....))..)))................(((((...(((((...(((((--....)))))....)))))...)))))...... ( -19.10, z-score = -0.30, R) >droEre2.scaffold_4690 5117507 68 - 18748788 --------------------UUAACCAACCCCACC------GCUGUCACCACGCCUUUUGGC--AAAAGUUAACAUUGCGUGCAUGCAGCUCGACU --------------------...............------(((((...(((((...(((((--....)))))....)))))...)))))...... ( -16.40, z-score = -1.85, R) >dp4.chrXL_group1a 3140739 78 - 9151740 ---UGCGAUGCCCCUCAU-------CCCCUGCAUUCU----GCUGAGGCCAU--CCCUAAGCC--AAAGUUAACAUUGCGUGCCUGCAGCUUCGCU ---.((((.((.......-------.....(((....----(((..(((...--......)))--..)))......)))((....)).)).)))). ( -16.30, z-score = 0.26, R) >droPer1.super_11569 623 84 + 888 ---UGCGAUGCCCCUCCCUACCC-CCCCCUGCAUUCU----GCUGAGGCCAU--CCCUAAGCC--AAAGUUAACAUUGCGUGCCUGCAGCUUCGCU ---.((((.((............-......(((....----(((..(((...--......)))--..)))......)))((....)).)).)))). ( -16.30, z-score = -0.44, R) >consensus UUAACCAACACCCAUCGU_CCCCGCCCCCCGCACC______GCUGUCACCACGCCUUUUGGCC_AAAAGUUAACAUUGCGUGCAUGCAGCUCGACU .........................................(((((...(((((...(((((......)))))....)))))...)))))...... (-10.32 = -11.14 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:50 2011