| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,182,250 – 13,182,346 |
| Length | 96 |
| Max. P | 0.994820 |
| Location | 13,182,250 – 13,182,346 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 65.10 |
| Shannon entropy | 0.56808 |
| G+C content | 0.59711 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -18.60 |
| Energy contribution | -18.26 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.994820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13182250 96 + 22422827 CCAAAUGGGCGGCCAAACGAA---AGAGGGGCGUGG--AGAUCGCCCCCCUUCUCCUUUUC-AUUCUCCACCUUCAUCGUCCAGCAAUCCACCGCUGCCCCU--- ......(((((((....(...---.).((((.((((--(((....................-..)))))))))))..................)))))))..--- ( -29.15, z-score = -1.22, R) >droSim1.chrX 10081686 92 + 17042790 CCAAAUGGGCGGCCAAACGAA---AGAGGGG-GUGG--AGAUCGCCCCCCUUCUUCUCCU----UCUCCACCCAUCACAUCAAGCCAUCCACCGCUGCCCCU--- ......(((((((....(...---.)...((-((((--(((...................----)))))))))....................)))))))..--- ( -32.11, z-score = -2.27, R) >droSec1.super_21 937556 93 + 1102487 CCAAAUGGGCGGUCAAACGAA---AGAGGGGCGUGG--AGAUCGCCCCCCUUCUUCUCCU----UCUCCACCCAUCACAUCAAGCCAUCCACCGCUGCCCCU--- ....(((((.((......(((---..(((((.(((.--....))).)))))..)))....----...)).))))).......(((........)))......--- ( -26.62, z-score = -0.89, R) >dp4.chrXL_group1e 415952 105 + 12523060 UCUAAUGAGCGCCAACACAAACCCAGAGGGGUGUGCUCGAAGCGCACUCCUCUUCCUGCUGUGGCCCCUUGUCGCCAUAUUCUUCUCGCUGCCGUCGCAGCCUCU ....(((.(((.(((((((.....((((((((((((.....))))))))))))......)))).....))).)))))).........(((((....))))).... ( -37.60, z-score = -3.04, R) >droPer1.super_30 154629 105 - 958394 UCUAAUGAGCGCCAACACAAACCCAGAGGGGUGUGCUCGAAGCGCACUCCUCUUCCUGCUGUGGCCCCUUGUCGCCAUAUUCUUCUCGCUGCCGUCGCAGCCUCU ....(((.(((.(((((((.....((((((((((((.....))))))))))))......)))).....))).)))))).........(((((....))))).... ( -37.60, z-score = -3.04, R) >consensus CCAAAUGGGCGGCCAAACGAA___AGAGGGGCGUGG__AGAUCGCCCCCCUUCUCCUCCU____UCUCCACCCACCACAUCCAGCCAUCCACCGCUGCCCCU___ ......(((((((............((((((.((((.....)))).))))))..............................(....).....)))))))..... (-18.60 = -18.26 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:42 2011