| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,177,959 – 13,178,046 |
| Length | 87 |
| Max. P | 0.517554 |
| Location | 13,177,959 – 13,178,046 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Shannon entropy | 0.35617 |
| G+C content | 0.41103 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.18 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13177959 87 + 22422827 CAGUCAUAUUAAAUUAAUUAUAGUCAUCAGUGGGUUGCAUUGUGAGCUAGAAAUGCGUGUUUCCCACU--GAGACGACAGAGGCACUUA ..(((.((......))......(((.((((((((..((((.....((.......))))))..))))))--))))))))........... ( -24.50, z-score = -2.28, R) >droAna3.scaffold_13117 1825104 88 - 5790199 -CCCCGAGUCGCAUUAAUUAUAGUCAUCAGUGGCUCGUAUUGUGAGCUUCAUCCGCGUGCUUUCCCUUUGGAAACUUUGUUGGAAAAUA -...((((((((.................))))))))..............((((((...(((((....)))))...)).))))..... ( -17.93, z-score = -0.23, R) >droEre2.scaffold_4690 5052789 87 - 18748788 CACUCAUAUUAAACUAAUUAUAGUUAUCAGUGGGAUGCAUGGUGGGAUAGAAAUGCGUGUUUCCCACU--GAGACGACAGAAGCACUUA ......................(((.(((((((((.(((((..............))))).)))))))--))...)))........... ( -22.54, z-score = -1.83, R) >droYak2.chrX 7455260 87 + 21770863 CGGUCAUAUUAAAUUAAUUAUAGUCAUCAGUGGGAUGCAUUGUGGGCUAGAAAUGCUUGUUUUCCACU--GAGACGACCACAGCACUCA .((((.((......))......(((.(((((((((.(((.....(((.......)))))).)))))))--))))))))).......... ( -26.20, z-score = -2.69, R) >droSec1.super_21 933253 87 + 1102487 CAGUCAUAUUAAAUUAAUUAUAGUCAUCAGUGGGUUGCAUUGUGAGCUAGAAAUGCGUGUUUCCCACU--GAGACGACAGAGGCACUUA ..(((.((......))......(((.((((((((..((((.....((.......))))))..))))))--))))))))........... ( -24.50, z-score = -2.28, R) >droSim1.chrX 10076687 87 + 17042790 CAGUCAUAUUAAAUUAAUUAUAGUCAUCAGUGGGUUGCAUUGUGAGCUAGAAAUGCGUGUUUCCCACU--GAGACGACAGAGGCACUUA ..(((.((......))......(((.((((((((..((((.....((.......))))))..))))))--))))))))........... ( -24.50, z-score = -2.28, R) >consensus CAGUCAUAUUAAAUUAAUUAUAGUCAUCAGUGGGUUGCAUUGUGAGCUAGAAAUGCGUGUUUCCCACU__GAGACGACAGAGGCACUUA ......................(((...((((((..((((.((...........))))))..))))))....))).............. (-12.15 = -12.18 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:41 2011