| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,177,415 – 13,177,466 |
| Length | 51 |
| Max. P | 0.618058 |
| Location | 13,177,415 – 13,177,466 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 65.18 |
| Shannon entropy | 0.68461 |
| G+C content | 0.34793 |
| Mean single sequence MFE | -8.27 |
| Consensus MFE | -3.74 |
| Energy contribution | -4.64 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13177415 51 + 22422827 CCAAAGUUUUUAUAAAUUGAGUUCGG---UCAAUUUAAUUGGCGGGAAACGUUU- .....((((((...(((((((((...---..)))))))))....))))))....- ( -8.40, z-score = -0.89, R) >droEre2.scaffold_4690 5052237 51 - 18748788 CCAAAGUUUUUAUAAAUUGAGUUCGG---UCAAUUUAAUUGGCGGGAAACAUUU- .....((((((...(((((((((...---..)))))))))....))))))....- ( -8.40, z-score = -1.19, R) >droYak2.chrX 7454716 51 + 21770863 CCAGCGUUUUUACAAAUUGAGUUCGG---UCAAUUCAAUUGGUGGGAAUCAUUU- .....((((((((.(((((((((...---..))))))))).)))))))).....- ( -11.40, z-score = -2.00, R) >droSec1.super_21 932722 51 + 1102487 CCACAGUUUUUAUAAAUUGAGUUCGG---UAAAUUUAAUUGGCGGGAAAAAUUU- ((.((((((....))))))....((.---(((......))).))))........- ( -5.80, z-score = -0.04, R) >droSim1.chrX 10076152 51 + 17042790 CCACGGUUUUUAUAAAUUGAGUUCGG---UAAAUUUAAUUGGCGGGAAACAUUU- .....((((((...(((((((((...---..)))))))))....))))))....- ( -8.30, z-score = -0.89, R) >droMoj3.scaffold_6473 2971198 52 - 16943266 ---AAUUUGUCAUUUCUUCGAUUCGUCUUUCGCCUCCACUGAACGAACGAACGGU ---..............(((.((((((.((((.......)))).).)))))))). ( -7.00, z-score = 0.64, R) >droGri2.scaffold_15245 7444037 52 + 18325388 CAAAAACUUUGUGAAAUUUAAGCAGC---UCCAUCCAAUUAAUUGGAAGUGCUAC ....................((((..---((((..........))))..)))).. ( -8.60, z-score = -1.06, R) >consensus CCAAAGUUUUUAUAAAUUGAGUUCGG___UCAAUUUAAUUGGCGGGAAACAUUU_ .....((((((...(((((((((........)))))))))....))))))..... ( -3.74 = -4.64 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:41 2011