| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,292,985 – 11,293,078 |
| Length | 93 |
| Max. P | 0.875639 |
| Location | 11,292,985 – 11,293,078 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.29 |
| Shannon entropy | 0.40495 |
| G+C content | 0.36805 |
| Mean single sequence MFE | -19.55 |
| Consensus MFE | -11.07 |
| Energy contribution | -9.97 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11292985 93 - 23011544 UGCCUUUGAUAUGGCAUACCAAGCAUG-UACAAAUCCACUCACACACACACAAACACACAUAAACGAGUGUGUUUUUAUGUAAAUCCAUAUCUA .......(((((((..(((.......)-))...............(((.(.((((((((........)))))))).).)))....))))))).. ( -17.00, z-score = -1.38, R) >droAna3.scaffold_12916 12014229 78 + 16180835 UGCCUUCGAUAUGGCAUGCAGAGUGUACUAUAUAU----GAACAUAUACAC------------AUGAGUAUGUUUAUAUGGAAAUCCGUAUAUG ((((........))))......((((((...((((----((((((((.(..------------..).))))))))))))((....)))))))). ( -21.80, z-score = -2.16, R) >droEre2.scaffold_4929 12491508 79 + 26641161 UGCCUUUGAUAUGGCAAACCAAGCAUG-UACACACUC--UCACACGCACAC------------ACGAGUGUGUUUUUAUGUAAAUCCAUAUAUA ((((........))))......(((((-.((((((((--............------------..))))))))...)))))............. ( -19.84, z-score = -2.38, R) >consensus UGCCUUUGAUAUGGCAUACCAAGCAUG_UACAAAU_C__UCACACACACAC____________ACGAGUGUGUUUUUAUGUAAAUCCAUAUAUA ((((........))))...........................((((((..................))))))...((((......)))).... (-11.07 = -9.97 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:01 2011