| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,148,886 – 13,148,985 |
| Length | 99 |
| Max. P | 0.899027 |
| Location | 13,148,886 – 13,148,985 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.00 |
| Shannon entropy | 0.31469 |
| G+C content | 0.45688 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -18.73 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13148886 99 - 22422827 CCCGUUUGGCAAGAAGUGGUGACCCA---------------CGCUGUUUCUUAAAUCUGCA-UCGCGUCUUUAAAUGACGCACUUGAAAUCGGAAGAAGCUGUAAUC--CAAACGGA--- .((((((((.((((((..(((.....---------------)))..)))))).....((((-.((((((.......)))))........((....)).).))))..)--))))))).--- ( -35.60, z-score = -4.16, R) >droSim1.chrU 513418 99 + 15797150 CCCGUUUAGCAAGAAGUGGUGACCCA---------------CACUGUUCCUUAAAUCUGCA-UUGCGCCUCUAAAUGACGCACUUGAAAUCGGAAGAAGCUGUAAUC--AAAACGGA--- .((((((...(((.((..(((.....---------------)))..)).))).....((.(-((((((.((.....)).))........((....))....))))))--))))))).--- ( -22.30, z-score = -0.73, R) >droSec1.super_21 892816 99 - 1102487 CCCGAUUAGCGAGAAGUGGUGACCCA---------------CACUGUUCCUUAAAUCUGCA-UUGCGUCUCUAAAUGACGCACUUGAAAUCGGAAGAAGCUGUAAUC--AAAACGGA--- .((((((..((((..((((....)))---------------)...................-.((((((.......)))))))))).))))))......((((....--...)))).--- ( -26.20, z-score = -1.92, R) >droYak2.chrX 7422139 119 - 21770863 -CCGUUCAGCAAAAAGUGGUGACCCAACCACAUCGAAUGCUCACUGUGACUUGCAACUGCAGCUUUAUUUGCAAAUGACGCACUUGAAAUCGGAAGAAGCUGUAAUCUGUGAACGGAUGU -(((((((((((...(((((......)))))...((....))........))))...((((((((((..(((.......)))..)))).((....)).)))))).....))))))).... ( -35.60, z-score = -2.27, R) >consensus CCCGUUUAGCAAGAAGUGGUGACCCA_______________CACUGUUCCUUAAAUCUGCA_UUGCGUCUCUAAAUGACGCACUUGAAAUCGGAAGAAGCUGUAAUC__AAAACGGA___ .(((((((((...((((((((....................))).(((..(((((..(((....)))..)))))..))).)))))....((....)).))).........)))))).... (-18.73 = -18.35 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:37 2011