| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,134,072 – 13,134,163 |
| Length | 91 |
| Max. P | 0.532526 |
| Location | 13,134,072 – 13,134,163 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 97.79 |
| Shannon entropy | 0.03027 |
| G+C content | 0.47603 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -23.60 |
| Energy contribution | -24.27 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13134072 91 - 22422827 CGUCCCCAGGGUGCUGCUGUUGUUUCCUACACAGAUUGUGUAUUUUGUGUAUCUGCAAAGGGUUUUUAUCCGCUCCUAAUUGACAGGCACC .........(((((..(((((((....((((((((........))))))))...))...((((....))))..........)))))))))) ( -23.10, z-score = -0.60, R) >droSec1.super_21 878779 90 - 1102487 CGUCCCCAGGGAGCUGCUGUUGUUUCCUACACAGAUUGUGUA-UUUGUGUAUCUGCAAAGGGUUUUUAUCCGCUCCUAAUUGACAGGCACC .(((....((((((.....((((....(((((((((.....)-))))))))...)))).((((....))))))))))....)))....... ( -27.80, z-score = -2.09, R) >droSim1.chrX 10024465 90 - 17042790 CGUCCCCAGGGAGCUGCUGUUGUUUCCAACACAGAUUGUGUA-UUUGUGUAUCUGCAAAGGGUUUUUAUCCGCUCCUAAUUGACAGGCACC .(((....((((((.....((((.....((((((((.....)-)))))))....)))).((((....))))))))))....)))....... ( -26.30, z-score = -1.54, R) >consensus CGUCCCCAGGGAGCUGCUGUUGUUUCCUACACAGAUUGUGUA_UUUGUGUAUCUGCAAAGGGUUUUUAUCCGCUCCUAAUUGACAGGCACC .(((....((((((.....((((....((((((((........))))))))...)))).((((....))))))))))....)))....... (-23.60 = -24.27 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:35 2011