| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,127,824 – 13,127,917 |
| Length | 93 |
| Max. P | 0.951860 |
| Location | 13,127,824 – 13,127,917 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.32 |
| Shannon entropy | 0.24806 |
| G+C content | 0.45545 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -17.96 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.951860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13127824 93 + 22422827 CGUGUGUAUAUCCACAUAGCCAGAAGAAUCUGAAGAAGAGCCGAAGAAGGCUUGGAGACAAUGACGUUUAAUAGCGGUCGCUAAGUGGGAAGG ..........(((((.((((((((....)))).....(((((......)))))(....)...((((((....))).))))))).))))).... ( -25.90, z-score = -2.43, R) >droEre2.scaffold_4690 5000082 80 - 18748788 ------------UAUACGACCAGAAGAAUCUGAAGAACAGGCGAAGAAGGCUUGGAGACAAUGGCGUUUAAUAGCGGUCGCUAAGUGGAAGG- ------------....(((((........(((.....)))((...(((.(((((....))..))).)))....)))))))............- ( -19.30, z-score = -1.90, R) >droYak2.chrX 7398746 89 + 21770863 --UAUAUACA-CUACAUAUCCAGAAGAAUCUGAAGAAGAGGCGAAGAAGGCUUGGAGACAAUGACGUUUAAUAGCGGUCGCUAAGUGGAAGG- --........-((((.....((((....)))).......(((((.......(((....)))...((((....)))).)))))..))))....- ( -19.10, z-score = -1.60, R) >droSec1.super_21 872928 92 + 1102487 UAUAUACAUAUCCACAUAGCCAGAAGAAUCUGAAGAAGAGGCGAAGAAGGCUUGGAGACAAUGACGUUUAAUAGCGGUCGCUGAGUGGAAGG- ..........(((((.((((((((....)))).......(((.........(((....)))...((((....))))))))))).)))))...- ( -23.70, z-score = -2.60, R) >droSim1.chrX 10018163 92 + 17042790 CAUAUACAUAUCCACAUAGCCAGAAGAAUCUGAAGAAGAGGCGAAGAAGGCUUGGAGACAAUGACGUUUAAUAGCGGUCGCUGAGUGGAAGG- ..........(((((.((((((((....)))).......(((.........(((....)))...((((....))))))))))).)))))...- ( -23.70, z-score = -2.51, R) >consensus __UAUACAUAUCCACAUAGCCAGAAGAAUCUGAAGAAGAGGCGAAGAAGGCUUGGAGACAAUGACGUUUAAUAGCGGUCGCUAAGUGGAAGG_ ..........(((((.....((((....)))).......(((((.......(((....)))...((((....)))).)))))..))))).... (-17.96 = -18.28 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:33 2011