| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,121,574 – 13,121,675 |
| Length | 101 |
| Max. P | 0.768166 |
| Location | 13,121,574 – 13,121,675 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.22 |
| Shannon entropy | 0.41672 |
| G+C content | 0.48303 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -20.96 |
| Energy contribution | -21.08 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13121574 101 - 22422827 ----------GGGAAAUGAAGGAGAGAGCAGGUCU--------UAGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUGUUGCCUCAUUUGUGGCUAUGUUUUUGGAGGCGAA ----------........((((..(((.((((.((--------(((.((((((....)))))).))))).)))).)))..)))).(((((((......(((...)))....))))))). ( -32.00, z-score = -0.92, R) >droEre2.scaffold_4690 4993975 111 + 18748788 GGGAAAUGAAAUGAAAUGAAGGAGAGAGCCGGUCU--------GAGCCCGGCUUUAAACUCGGACUGGGUCUUGAUCUAGUUUUCUUACCUCAUUUGUGACUAUGUCUUUGGAGGCAAA .(.((((((...((((...(((.((((.(((((((--------(((............)))))))))).))))..)))...)))).....)))))).).....(((((....))))).. ( -32.00, z-score = -0.85, R) >droYak2.chrX 7392314 101 - 21770863 -----GGGAAAUGAAUUGAAGGAGAGAGCAGGUCUUGGUCUUAUAACCUGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCCUACCUCAUUUGUGAGGCCAA------------- -----((............(((((((...(((((..(..((......((((((....))))))...))..)..)))))..))))))).(((((....)))))))..------------- ( -30.20, z-score = -0.58, R) >droSec1.super_21 866852 83 - 1102487 ----------GGGAAAUGGAGGAGAGAGCAGGUCU--------UAGCCCGGUUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGC------------------ ----------.(.(((((.(((((((((((((((.--------..(((((((((.......)))))))))...))))).)))))))..)))))))).)...------------------ ( -33.10, z-score = -3.00, R) >droSim1.chrX 10011885 83 - 17042790 ----------GGGAAAUGGAGGAGAGAGCAGGUCU--------UAGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGC------------------ ----------.(.(((((.(((((((((((((((.--------..((((((..(.......)..))))))...))))).)))))))..)))))))).)...------------------ ( -29.60, z-score = -1.43, R) >consensus __________GGGAAAUGAAGGAGAGAGCAGGUCU________UAGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGC__________________ .............(((((.(((.(((((((((((...........((((((.((........))))))))...))))).))))))...))))))))....................... (-20.96 = -21.08 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:33 2011