| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,121,158 – 13,121,254 |
| Length | 96 |
| Max. P | 0.965450 |
| Location | 13,121,158 – 13,121,254 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.48 |
| Shannon entropy | 0.25655 |
| G+C content | 0.27928 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -12.26 |
| Energy contribution | -13.90 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13121158 96 + 22422827 AAGAGACUAUAAAAACAGUUAGUAACCAAAAAAAUCACCGAAGCAUUAGAUUGCAAAUAUGUUAGAAUCAAUCGAU-------------GAUUGAUUUAACAUGCAAAU ....((((........))))......................(((......)))...(((((((((.((((((...-------------)))))))))))))))..... ( -15.20, z-score = -2.36, R) >droSec1.super_21 866361 106 + 1102487 AGGAGACUAUAAAAA--GUUAGUCACCAAAAAAA-CACUGAAGAAUUUGAUUCCGAAUAUGUUACAAUCAAUCGAUCAUGCUUAGGAUUAAUUGAUUUAACAUGCAAAU .((.(((((......--..))))).)).......-.........(((((....)))))((((((.(((((((..(((........)))..)))))))))))))...... ( -22.80, z-score = -3.18, R) >droSim1.chrX 10011404 106 + 17042790 AGGAGACUAUAAAAA--AAUAGUUACCAAAAAAU-CACUGAAGCAUUUGAUUUCAAAUAUGUUACAAUCAAUCGAUCAUGCUUAGGAUUAAUUGAUUUAACUUGCAAAU .((.((((((.....--.)))))).)).......-.......(((((((....)))))..((((.(((((((..(((........)))..)))))))))))..)).... ( -22.60, z-score = -3.35, R) >consensus AGGAGACUAUAAAAA__GUUAGUAACCAAAAAAA_CACUGAAGCAUUUGAUUCCAAAUAUGUUACAAUCAAUCGAUCAUGCUUAGGAUUAAUUGAUUUAACAUGCAAAU .((.(((((..........))))).))..............................(((((((.(((((((..(((........)))..))))))))))))))..... (-12.26 = -13.90 + 1.64)
| Location | 13,121,158 – 13,121,254 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Shannon entropy | 0.25655 |
| G+C content | 0.27928 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13121158 96 - 22422827 AUUUGCAUGUUAAAUCAAUC-------------AUCGAUUGAUUCUAACAUAUUUGCAAUCUAAUGCUUCGGUGAUUUUUUUGGUUACUAACUGUUUUUAUAGUCUCUU ..((((((((((((((((((-------------...)))))))).)))))....)))))...........(((((((.....))))))).(((((....)))))..... ( -19.00, z-score = -2.94, R) >droSec1.super_21 866361 106 - 1102487 AUUUGCAUGUUAAAUCAAUUAAUCCUAAGCAUGAUCGAUUGAUUGUAACAUAUUCGGAAUCAAAUUCUUCAGUG-UUUUUUUGGUGACUAAC--UUUUUAUAGUCUCCU ......(((((((((((((..(((........)))..))))))).))))))....(((((((((..(......)-....))))))(((((..--......)))))))). ( -21.40, z-score = -2.21, R) >droSim1.chrX 10011404 106 - 17042790 AUUUGCAAGUUAAAUCAAUUAAUCCUAAGCAUGAUCGAUUGAUUGUAACAUAUUUGAAAUCAAAUGCUUCAGUG-AUUUUUUGGUAACUAUU--UUUUUAUAGUCUCCU ..(..(..(((((((((((..(((........)))..))))))).)))).((((((....)))))).....)..-)......((..(((((.--.....)))))..)). ( -21.30, z-score = -2.27, R) >consensus AUUUGCAUGUUAAAUCAAUUAAUCCUAAGCAUGAUCGAUUGAUUGUAACAUAUUUGAAAUCAAAUGCUUCAGUG_UUUUUUUGGUAACUAAC__UUUUUAUAGUCUCCU ......((((((((((((((.(((........))).)))))))).))))))...............................((..((((..........))))..)). (-11.29 = -11.93 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:32 2011