| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,113,007 – 13,113,095 |
| Length | 88 |
| Max. P | 0.626912 |
| Location | 13,113,007 – 13,113,095 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.35 |
| Shannon entropy | 0.21153 |
| G+C content | 0.46073 |
| Mean single sequence MFE | -27.46 |
| Consensus MFE | -19.60 |
| Energy contribution | -20.36 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13113007 88 + 22422827 UAUUCCCGAAUGGAGUUG--------UGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGACCAACACAACUUCACCUCUUUCCA- .......((.((((((((--------((..((((.((((....)))).))))((((((((......))))))))..))))))))))..))......- ( -30.50, z-score = -3.43, R) >droSim1.chrX 10002281 87 + 17042790 AAUUCCCGAAUGGAGUUG--------UGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGACCA-CACAACUUCACCUCUUUCCA- .......((.((((((((--------((..((((.((((....)))).))))((((((((......)))))))).-))))))))))..))......- ( -30.50, z-score = -3.33, R) >droSec1.super_21 858284 87 + 1102487 UAUUCCCGAAUGGAGUUG--------UGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGACCA-CACAACUUCACCUCUUUCCA- .......((.((((((((--------((..((((.((((....)))).))))((((((((......)))))))).-))))))))))..))......- ( -30.50, z-score = -3.45, R) >droYak2.chrX 7383995 87 + 21770863 CAUUCCCGAAUGGAGUUG--------UGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGUGCU--GGUGCUUCACCUCUUUUCCA .......(((.((((.((--------.((......((((....))))(((((.(.(((((......)))))).))--)))))..)).)))).))).. ( -22.90, z-score = 0.01, R) >droEre2.scaffold_4690 4986008 94 - 18748788 UAUUCCCAAAUGGAGCUGGACAAAUGUGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGGUCU--AGUGCUUAACCUCUUUCCA- ...(((.....)))(((((((......((.((((.((((....)))).)))).))(((((......)))))))))--)))................- ( -22.90, z-score = 0.24, R) >consensus UAUUCCCGAAUGGAGUUG________UGCGUUGGACAUUAAUGGAUGACCAGGGUCAACAUUUGCCUGUUGACCA_CACAACUUCACCUCUUUCCA_ ..........((((((((............((((.((((....)))).))))((((((((......))))))))....))))))))........... (-19.60 = -20.36 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:30 2011