| Sequence ID | dm3.chr2L |
|---|---|
| Location | 987,795 – 987,898 |
| Length | 103 |
| Max. P | 0.522320 |
| Location | 987,795 – 987,898 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 60.02 |
| Shannon entropy | 0.68601 |
| G+C content | 0.44721 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -10.98 |
| Energy contribution | -13.26 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 987795 103 - 23011544 AAAAACAUGGGUGGCUAGGUGCCGAGUUGUCUCGACGCUGGCAAUACC-CUUGCGAAAUGUGAUGCAUUCGCAACGCAGAUGCAGCAAAAUGGAAUUCACAAUC---------------- .....(((((((((((((.((.((((....)))).)))))))..))))-)(((((...((((.(((....))).))))..)))))....)))............---------------- ( -31.00, z-score = -1.01, R) >droEre2.scaffold_4929 1041318 79 - 26641161 AAAAACAUUGGUGGCUAGCUGCGGAGUUGCCUCGACACUGGUGAUACCGAUUGUUGCAGACAAAUUACACUUAAUAACC----------------------------------------- .......(((...((.(((..(((.((..((........))..)).)))...)))))...)))................----------------------------------------- ( -17.70, z-score = -0.76, R) >droYak2.chr2L 971634 119 - 22324452 AAAAACAUGGGCGAAUAGGUGCAGAGUGGUCUGGACCCUUGCAAUACC-CUUGCGAAACUAUAAAAGUGAGUGUAAACGAUGCAGCAGCAUUUUAGUUAAAGAAAUGGAAUUUAGUAAUC .....(((.(((((...(((.((((....)))).))).))))..(((.-((..(............)..)).)))..).)))......((((((.......))))))............. ( -21.90, z-score = 0.74, R) >droSec1.super_14 951063 103 - 2068291 AAAAACAUGGGUGGCUAGGUGCGGAGUUGACUCGACGCUGGCAAUACC-CUUGCAAAAUGUGAUGCAUUAGCAUCGCAGAUGCAGCAAUAUGGAAUUUAUAACC---------------- .....(((((((((((((.((..(((....)))..)))))))..))))-)(((((...((((((((....))))))))..)))))....)))............---------------- ( -33.70, z-score = -2.48, R) >droSim1.chr2L 971553 103 - 22036055 AAAAACAUGGGUGGCUAGGUGCGGAGUUGACUCGACGCUGGCAAUACC-CUAGUGAAAUGUGGUGCAUCAGCACUGCAGUUAAAACAAAAUGGCAUUUAUAACC---------------- .....(((((((((((((.((..(((....)))..)))))))..))))-)..((.((.((..((((....))))..)).))...))...)))............---------------- ( -28.70, z-score = -0.90, R) >consensus AAAAACAUGGGUGGCUAGGUGCGGAGUUGACUCGACGCUGGCAAUACC_CUUGCGAAAUGUGAUGCAUUAGCAACGCAGAUGCAGCAAAAUGGAAUUUAUAACC________________ ........((((((((((.((..(((....)))..)))))))..)))).)(((((...((((((((....))))))))..)))))................................... (-10.98 = -13.26 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:28 2011