| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,099,188 – 13,099,278 |
| Length | 90 |
| Max. P | 0.603889 |
| Location | 13,099,188 – 13,099,278 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.28709 |
| G+C content | 0.26587 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -11.21 |
| Energy contribution | -12.67 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13099188 90 + 22422827 ACAGCA--GUCAAAGUGUAUAU----AAAUCAAUUGGAUUUUUU--AUACAAAAUUAGAUCUGAUAU-UGAGUC-AAAAUAAAUAAUAACUGCUAGGCUU------- ..((((--((.....((((((.----(((((.....)))))..)--)))))..........((((..-...)))-)............))))))......------- ( -15.80, z-score = -1.45, R) >droSec1.super_21 844707 107 + 1102487 ACAGCACAGUCGAAGUGUAUAUAUGUAAGUCAAUUGGAUUUUUUGUAUACAAAAUUAGAUCUAAAAUCUAAAUCUAAAAUAAAUAAAGAUAUAUAGCUGUCGGGUGU .....(((.((((((((((((((...(((((.....)))))..)))))))....((((((.....))))))........................))).)))).))) ( -20.20, z-score = -2.02, R) >droSim1.chrX 9989142 107 + 17042790 ACAGCACAGUCGAAGUGUAUAUAUGUAAGUCAAUUGGAUUUUUUGUAUACAAAAUUAGAUCUAAAAUGUAAAUCUAAAAUAAAUAAAGAUAUAUAGCUGUCGGCUGU .....((((((((((((((((((...(((((.....)))))..)))))))....((((((.((.....)).))))))..................))).)))))))) ( -24.10, z-score = -3.14, R) >consensus ACAGCACAGUCGAAGUGUAUAUAUGUAAGUCAAUUGGAUUUUUUGUAUACAAAAUUAGAUCUAAAAU_UAAAUCUAAAAUAAAUAAAGAUAUAUAGCUGUCGG_UGU (((((..........((((((((...(((((.....)))))..))))))))...((((((.((.....)).))))))..................)))))....... (-11.21 = -12.67 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:27 2011