| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,080,889 – 13,080,985 |
| Length | 96 |
| Max. P | 0.724494 |
| Location | 13,080,889 – 13,080,985 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.06 |
| Shannon entropy | 0.42713 |
| G+C content | 0.42152 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -15.44 |
| Energy contribution | -16.12 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13080889 96 - 22422827 AAGACAUUAUCCUAGUUACAAAGCUUAAGCUGGGUAAAGGAACC-------------CUGGCGAAACGGAAAUAACAAAUUGUAACUCAGGUAGCGGAACUCUU-AAAUC (((((.....(((((((((((.......(((((((......)))-------------).))).....(.......)...)))))))).))).....)...))))-..... ( -19.20, z-score = -0.60, R) >droSim1.chrX 9964853 110 - 17042790 AAGACAUAAUCCUAGUUACAAAGCUUAAGCUGGGUAAAGUAACCCGGCCCAAAUUUACCGGAGUAGCGGAAAAAACAAAUUGUAACUCAGGCAGCGAAGCUCCUGAAAUC ..............(((((((.......(((((((......))))))).........(((......)))..........)))))))(((((.(((...)))))))).... ( -30.80, z-score = -2.85, R) >droSec1.super_21 826863 110 - 1102487 AAGACAUAAUCCUAGUUACAAAGCUUAAGCUGGGUAAAGUAACCCGGCCCAAAUUUACCGGAGUAGCGGAAGAAAGAAAUUGUAACUCAGGCAGCGAAACUCCUGAAAUC ..............(((((((..(((..(((((((......))))))).........(((......)))....)))...)))))))(((((.((.....))))))).... ( -29.60, z-score = -2.45, R) >droYak2.chrX 7351541 101 - 21770863 AAGACUUAAUCCUAGUUACAAAGCUUAAGCUGGAGCAGAAAA-CCGGGCAAAUUUUUCCGGAGAAGCGGAAAAAACAAAUUGUAAGUCAGGCGGGCGAAUGC-------- ..((((((..((..(((.....((((......))))....))-)..))....((((((((......))))))))........))))))..(((......)))-------- ( -22.10, z-score = -0.12, R) >droEre2.scaffold_4690 4954145 102 + 18748788 AACACCUAAUCCUAGUUACAAAGCUUAAGCUGGGGAAGAAAACCCUGACAAAUUUACCGGAAGAAGCGGAAAAAACAAAUUGUAACUCAGGCAGCCGAAAGC-------- ..........(((((((((((.((((..(..((((.......))))..)........(....)))))(.......)...)))))))).)))....(....).-------- ( -20.70, z-score = -0.87, R) >consensus AAGACAUAAUCCUAGUUACAAAGCUUAAGCUGGGUAAAGAAACCCGGCCAAAAUUUACCGGAGAAGCGGAAAAAACAAAUUGUAACUCAGGCAGCGGAACUC_U_AAAUC ..........((((((((((((((....)))(((........)))............(((......)))..........)))))))).)))................... (-15.44 = -16.12 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:26 2011