| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,075,897 – 13,075,980 |
| Length | 83 |
| Max. P | 0.777959 |
| Location | 13,075,897 – 13,075,980 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 66.88 |
| Shannon entropy | 0.64797 |
| G+C content | 0.32930 |
| Mean single sequence MFE | -9.65 |
| Consensus MFE | -4.79 |
| Energy contribution | -4.73 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13075897 83 + 22422827 -AACUUUGUCAAACAUCCAG-AACUUUCAUCACUUUUGCACCUUUUCGUGCAUAUAACUUUUGGAAUUUCUUUGUAAAAUUAUUU -...........(((...((-((.(((((.......(((((......))))).........))))).)))).))).......... ( -12.19, z-score = -2.23, R) >droSim1.chrX 9966229 83 + 17042790 -AACUUUGUCAAACAUCCAG-CACUUUCGUCACUUUUGCACCUUUUCGUGCAUAUAACUUUCGGAAUUUCUUUGUAACAUUUUUU -...........(((...((-...(((((.......(((((......))))).........)))))...)).))).......... ( -8.89, z-score = -0.97, R) >droSec1.super_21 828173 68 + 1102487 -AACUUUGUCAAACAUGCAG-CACUUUCGUCACUUUUGCACCUUUUCGUGCAUAUAACUUUUGCAAAAAA--------------- -..............(((((-(......))......(((((......))))).........)))).....--------------- ( -8.20, z-score = -0.02, R) >droYak2.chrX 7353068 83 + 21770863 -AACUUUGUGAAACAUUCAGGUUCGUUCGUCACUUUUGCACCUUUAUGUGCAUACAACUUUUGGAAUUUUUUGGUAAAAUUUUU- -....(((((..((((..((((.((...........)).))))..))))...))))).....((((((((.....)))))))).- ( -11.20, z-score = 0.31, R) >droEre2.scaffold_4690 4955559 82 - 18748788 -AACUUUCUCAAACAUUCAG-UUCUUUCCUCACUUUUGCGCCUUUUCGUGCAACCAACUUUAAGAAUUUCUUUGUACAAUUUCG- -...........(((...((-(((((.........((((((......))))))........)))))))....))).........- ( -11.23, z-score = -3.40, R) >triCas2.chrUn_276 1246 85 + 13007 AUUGUUCAUCAAGUUGAUAAUAAGAACUCAAAUCAAUGUGCCGCUUCGUCCAAAUAACUAUUGUAGUUUCUCUGUCAAAUCAUUG .........(((.((((((....((((((((.....((..(......)..))........))).)))))...))))))....))) ( -6.22, z-score = 1.01, R) >consensus _AACUUUGUCAAACAUCCAG_AACUUUCGUCACUUUUGCACCUUUUCGUGCAUAUAACUUUUGGAAUUUCUUUGUAAAAUUUUU_ ....................................(((((......)))))................................. ( -4.79 = -4.73 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:25 2011