| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,051,148 – 13,051,240 |
| Length | 92 |
| Max. P | 0.658990 |
| Location | 13,051,148 – 13,051,240 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Shannon entropy | 0.32982 |
| G+C content | 0.32761 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.54 |
| Energy contribution | -16.10 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13051148 92 + 22422827 AAGUAUAAAUUAUGAAAUAUUGUGAGAUGACUCAAACGCUGGCCUUUCACAUUGUUAGAUUGGUCAGCUAAAA--------------CCCUACAAUAAUAUAUCCA .............((.((((((((((....)))....(((((((..((.........))..))))))).....--------------.......))))))).)).. ( -19.70, z-score = -2.31, R) >droEre2.scaffold_4690 4926611 105 - 18748788 -AGCUGAAAUUUAGAAAUAAUGGCAGAUGACUUAAGCGCUGGCCUUUCUAAUUCUUGAAUUGGCCAACUAAAAAGCCAAAUGGUACACUUUACAAUAAUAUAUCCA -.(((.....(((....))).))).((((..........(((((.(((........)))..)))))........(((....)))................)))).. ( -16.60, z-score = 0.36, R) >droYak2.chrX 7326534 106 + 21770863 AAAUAUAAACUAAGAAAUAAUGUGAAACGACUUAAACGCUGGCCUUUCACAUUCUUGGAUUGGUCAGCUUAAAAGCCAAAUGGUACACUUUACAAUAAUAUAUCCA ....................((((((...........(((((((..((.((....))))..)))))))......(((....)))....))))))............ ( -22.20, z-score = -2.84, R) >droSim1.chrX 9943691 106 + 17042790 AAGUAUAAAUUAUGAAAUAUUUUGAAAUGACUCAAACGCUGGCCUUUCACAUUGUUAGAUUGGUCAGCUAAAAGGCCAAGUGGUACACUUUACAAUAAUAUAUCCA .............((.((((((((.............(((((((..((.........))..)))))))..(((((((....)))...)))).))).))))).)).. ( -19.50, z-score = -0.63, R) >consensus AAGUAUAAAUUAAGAAAUAAUGUGAAAUGACUCAAACGCUGGCCUUUCACAUUCUUAGAUUGGUCAGCUAAAAAGCCAAAUGGUACACUUUACAAUAAUAUAUCCA .................(((((((((...........(((((((..((.........))..)))))))......(((....)))....)))))))))......... (-14.54 = -16.10 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:25 2011