| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,048,973 – 13,049,066 |
| Length | 93 |
| Max. P | 0.740168 |
| Location | 13,048,973 – 13,049,066 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 81.72 |
| Shannon entropy | 0.28063 |
| G+C content | 0.46233 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -17.69 |
| Energy contribution | -18.75 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13048973 93 - 22422827 AGCCGGCAAAACAUUAAAAGAAGCUAUCGAUAGUUCCGGCAGUAUCGAUGAUCUAAAGCUUCAAAAACUAUCGGUUUUUAUUGUCCCUAACGG------ ....(((((..........(((((((((((((.(......).))))))).......))))))((((((.....)))))).)))))((....))------ ( -21.01, z-score = -1.75, R) >droSim1.chrX 9941385 90 - 17042790 AGCCGGCAAAACAUCGAAAGCAGCUAUCGAUAGUGUAGGCCGCAUCGAUGAUCGCAAGCUUCAAUAGCUAUCGGUUUU--UUG-CCCUAACGG------ ....(((((((.(((((.(((....((((((.(((.....)))))))))((.(....)..))....))).))))).))--)))-)).......------ ( -28.70, z-score = -2.09, R) >droSec1.super_21 802610 90 - 1102487 AGCCGGCAAAACAUCGAAAGCAGCUAUCGAUAGUGUCGGCCGCAUCGAUGAUCUCAAGCUUCAAUAGCUAUCGGUUUU--UUG-CCCUAACGG------ ....(((((((.(((((.(((((((((((((.(((.....)))))))))(....).))))......))).))))).))--)))-)).......------ ( -26.60, z-score = -1.72, R) >droYak2.chrX 7324240 95 - 21770863 AGCCGGCAAAAAAUCGAAAGCAGCUAUCGAUAGUGCCGGCCGUGUUGAUACCCGAAAGCUU-AAGAACUAUCGGGUU--AUUG-CGUUAACGGCACUUA .(((((((....(((((.((...)).)))))..))))))).((((((..((((((.((...-.....)).))))))(--(...-...)).))))))... ( -32.60, z-score = -2.63, R) >consensus AGCCGGCAAAACAUCGAAAGCAGCUAUCGAUAGUGCCGGCCGCAUCGAUGAUCGAAAGCUUCAAUAACUAUCGGUUUU__UUG_CCCUAACGG______ .(((((((....(((((.((...)).)))))..))))))).........((((((.((((.....)))).))))))....................... (-17.69 = -18.75 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:24 2011