| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,044,042 – 13,044,137 |
| Length | 95 |
| Max. P | 0.609409 |
| Location | 13,044,042 – 13,044,137 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 67.52 |
| Shannon entropy | 0.64366 |
| G+C content | 0.62550 |
| Mean single sequence MFE | -38.56 |
| Consensus MFE | -13.90 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.90 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13044042 95 - 22422827 GGCGGAGCAUUGUAGACACUGCUGUAUCCUUGGGUAUGAGCGGCGGCGAAGGGCAGACCGCUGUUCUUCGUCUCGCUUUCUGGAGAGGAUGCGGC--------------- .((..((((.((....)).))))((((((((......((((((.((((((((((((....))))))))))))))))))......)))))))).))--------------- ( -43.70, z-score = -3.03, R) >droSim1.chrX 9933933 95 - 17042790 GGCGGGGCGUUGUAGACACUGCUGUAUCCUUGGGUGUGAGCGGCGGCGAAGGGCAGACCGCUGUUCUUCGUCUCGCUUUCUGGUGAGGAUGCGAC--------------- (((((..(......)...)))))(((((((((...(.((((((.((((((((((((....)))))))))))))))))).)...)))))))))...--------------- ( -43.10, z-score = -2.45, R) >droSec1.super_21 795782 95 - 1102487 GGCGGGGCGUUGUAGACACUGCUGUAUCCUUGGGUGUGAGCGGCGGCGAAGGGCAGACCGCUGUUCUUCGUCUCGCUUUCUGGAGAGGAUGCGAC--------------- (((((..(......)...)))))((((((((....(.((((((.((((((((((((....)))))))))))))))))).)....))))))))...--------------- ( -44.20, z-score = -2.75, R) >droYak2.chrX 7319982 95 - 21770863 GGCGGGGCAUUGUAGACACUGCUGUAUCCUUGGGUGUGAGCGGCGGCGAAGGGCAGGCCGCUGUUCUUGGUCUCGCCAUCUGGAGAGGAUGUGGC--------------- ((((((((.......(((((............)))))((((((((((.........))))))))))...))))))))((((.....)))).....--------------- ( -37.50, z-score = -0.50, R) >droEre2.scaffold_4690 4919697 95 + 18748788 GGCGGAGCGUUGUAGACACUGCUGUAUCCUUGGGUGUGAGCGGCGGCGAAGGGCAGGCCGCUGUUCUUCGUCUCGCCCUCUGGAGAGGAUGCGGU--------------- (((((.((......).).)))))((((((((......(((.(((((((((((((((....)))))))))))..)))))))....))))))))...--------------- ( -42.80, z-score = -1.25, R) >droAna3.scaffold_13117 2368010 104 - 5790199 GGCGGGGCAUUGUAGACGGUGCUGUAGCCCUGGGUAUGGGCCGCGGCGAAAGGCAAGCCGCUGUUCUUGGCCUCCGAGGACGGGGAGGCGACUGCGGGUGCGAC------ ......(((((((((.(..(((((..((((.......))))..)))))...)((...((.((((((((((...))))))))))))..))..)))).)))))...------ ( -45.30, z-score = -0.20, R) >dp4.Unknown_group_804 33367 86 + 58332 GGCGGGGCAUUGUAGACGGUGUUGUAGGCCUGGGUAUGGGCCGCAGCGAAGGGCAGGCCACUGUU-UCGGUUCGGGAGAGCGGCGUC----------------------- ((((((((.((((...(..((((((.(((((......)))))))))))..).))))))).)))))-.(.((((....)))).)....----------------------- ( -34.40, z-score = -1.48, R) >droPer1.super_1271 4130 86 - 6208 GGCGGGGCAUUGUAGACGGUGUUGUAGGCCUGGGUAUGGGCCGCAGCGAAGGGCAGGCCACUGUU-UCGGUUCGGGAGAGCGGCGUC----------------------- ((((((((.((((...(..((((((.(((((......)))))))))))..).))))))).)))))-.(.((((....)))).)....----------------------- ( -34.40, z-score = -1.48, R) >droWil1.scaffold_181150 2727137 73 - 4952429 GGCGGAGCAUUGGAUACACUGCUAUAGGCCUGGGUGUGGGCCUUGGCGAAGGGCAAUCCAUUGUU-GUUGUUGC------------------------------------ (((((((((.(((((.(..(((((.((((((......)))))))))))...)...))))).))))-.)))))..------------------------------------ ( -25.80, z-score = -0.99, R) >droVir3.scaffold_12928 7025415 109 + 7717345 GGCGGCGCAUUGUAGACGCUGCUGUAGGCCUCGGCAUAUGCCUCGGCAAAGGGCAGUCCAUUGUU-ACGAUUCCCAUUCCCAAUCCCAUUCCCAUUGGCAUUGGCAUUCC ...((.(.(((((((..((((((.(..(((..(((....)))..)))..).))))))......))-))))).)))....(((((.(((.......))).)))))...... ( -34.40, z-score = -0.19, R) >consensus GGCGGGGCAUUGUAGACACUGCUGUAGCCCUGGGUAUGAGCCGCGGCGAAGGGCAGGCCGCUGUUCUUGGUCUCGCUUUCUGGAGAGGAUGCGGC_______________ (((((.(..((((...(..((((((...(((......)))..))))))..).))))..).)))))............................................. (-13.90 = -13.00 + -0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:23 2011