| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,043,134 – 13,043,231 |
| Length | 97 |
| Max. P | 0.980032 |
| Location | 13,043,134 – 13,043,231 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 68.32 |
| Shannon entropy | 0.58182 |
| G+C content | 0.50495 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -13.58 |
| Energy contribution | -16.04 |
| Covariance contribution | 2.46 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.980032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13043134 97 + 22422827 GGGAAGUGGAAGUGGAUGCUAAACACUGGAUGGUGGAUGGCGGCUAAUGGAUAAUGGAUGCUCACGUAAGAGUUGCCAUUUUCCCCGUGUCACCACG ...........((((..((((..((((....))))..))))(((....(((.(((((..((((......))))..))))).)))....))).)))). ( -33.50, z-score = -1.95, R) >droEre2.scaffold_4690 4918829 82 - 18748788 ------GGGAAGUGU---CCAAGCACUGGACAGUGGAUAAUUGCUCGUAGUUG------GCUCACGUAAGAGUUGCCAUUUUCCCCGUGUCACCACG ------(((((((((---(((.....))))))((((.((((((....))))))------((((......))))..))))))))))((((....)))) ( -24.80, z-score = -1.08, R) >droSec1.super_21 794860 97 + 1102487 GGGAAGUGGAAGUGGCUGCUAAACACUGGAUGGUGGAUGGCGGCUAAUGGAUAAUGGAUGCUCACGUAAGAGUUGCCAUUUUCCCCGUGUCACCACG ((((..(((...(((((((((..((((....))))..)))))))))..(((.(((((..((((......))))..))))).))))))..)).))... ( -39.70, z-score = -3.57, R) >droSim1.chrX 9933006 97 + 17042790 GGGAAGUGGAAGUGGCUGCUAAACACUGGAUGGUGGAUGGCGGCUAAUGGAUAAUGGAUGCUCACGUAAGAGUUGCCAUUUUCCCCGUGUCACCACG ((((..(((...(((((((((..((((....))))..)))))))))..(((.(((((..((((......))))..))))).))))))..)).))... ( -39.70, z-score = -3.57, R) >droGri2.scaffold_14853 4508691 90 + 10151454 AUCGGCAGGCAAUCAAAGCAAAACUCUGAAAAGCGCACAGCAGCAAAUAGAAAAUGCA-AAUGAGUUAAAACCUGCCUGCCUGGAAGUAUG------ ...((((((((..........(((((......((.....)).(((.........))).-...)))))......))))))))..........------ ( -22.19, z-score = -1.21, R) >consensus GGGAAGUGGAAGUGGAUGCUAAACACUGGAUGGUGGAUGGCGGCUAAUGGAUAAUGGAUGCUCACGUAAGAGUUGCCAUUUUCCCCGUGUCACCACG (((((((((........((((..((((....))))..))))..................((((......))))..)))))))))............. (-13.58 = -16.04 + 2.46)
| Location | 13,043,134 – 13,043,231 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 68.32 |
| Shannon entropy | 0.58182 |
| G+C content | 0.50495 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -9.68 |
| Energy contribution | -12.40 |
| Covariance contribution | 2.72 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13043134 97 - 22422827 CGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCAUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGCAUCCACUUCCACUUCCC ((((....))))((((((((((...(((......)))...)))))...........((.(..(((......)))..).))............))))) ( -24.90, z-score = -1.69, R) >droEre2.scaffold_4690 4918829 82 + 18748788 CGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC------CAACUACGAGCAAUUAUCCACUGUCCAGUGCUUGG---ACACUUCCC------ ((((....))))(((((..((((.((......))..))------))...................(((((((...))))---))).)))))------ ( -25.90, z-score = -1.76, R) >droSec1.super_21 794860 97 - 1102487 CGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCAUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGCAGCCACUUCCACUUCCC ((((....))))((((((((((...(((......)))...)))))........((.((.(..(((......)))..).)).)).........))))) ( -26.90, z-score = -2.05, R) >droSim1.chrX 9933006 97 - 17042790 CGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCAUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGCAGCCACUUCCACUUCCC ((((....))))((((((((((...(((......)))...)))))........((.((.(..(((......)))..).)).)).........))))) ( -26.90, z-score = -2.05, R) >droGri2.scaffold_14853 4508691 90 - 10151454 ------CAUACUUCCAGGCAGGCAGGUUUUAACUCAUU-UGCAUUUUCUAUUUGCUGCUGUGCGCUUUUCAGAGUUUUGCUUUGAUUGCCUGCCGAU ------..........(((((((((.............-.((((...(........)..)))).....((((((.....)))))))))))))))... ( -26.30, z-score = -1.81, R) >consensus CGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCAUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGCAGCCACUUCCACUUCCC ((((....)))).(((.(((((...(((......)))...))))).))).......((.(..(((......)))..).))................. ( -9.68 = -12.40 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:22 2011