| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,042,169 – 13,042,283 |
| Length | 114 |
| Max. P | 0.612931 |
| Location | 13,042,169 – 13,042,283 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.35219 |
| G+C content | 0.43044 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -16.30 |
| Energy contribution | -17.55 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13042169 114 + 22422827 UAAAUGCAGGUCAAGCAAAAGUAUCUUGUACUUGUGUCGAGUAUCUUUU------GCUGCCGCCUUGUAAUGUACUGAAAAUUGGCCGCACUUUAAGGUGCGGCUGGUGUCGUGAGCAUC ....(((((((..((((((((...((((.((....))))))...)))))------)))...))).))))((((.((((..((..((((((((....))))))))..)).))).).)))). ( -43.70, z-score = -4.52, R) >droYak2.chrX 7318042 107 + 21770863 -------------AUCAAAAAUAUCUGGUACUUAUUACGAGUAUUUUUUUUUUUCGCUGCUGCUGUGUAAUGUAUGGAAAAUUGGCUGCGCUUUAAGGUGCGUCUGGUGUCGUGAGCAUC -------------...(((((((.((.(((.....))).))))))))).......(((((......))....(((((...((..(.((((((....)))))).)..)).))))))))... ( -22.00, z-score = 0.18, R) >droSec1.super_21 793928 114 + 1102487 UAAAUGCAGCUCAAGCAAAAGUAUCUUGUACUUGUGUCGAGUAUCUUGU------GCUGCCGCCGUGUAAUGUAUUGAAAUUUGGACGCACUUUAAGGUGCGGCUGGUGUCGUGAGUAUC ........(((((((((.(((...((((.((....))))))...))).)------)))((((((((.(((...........))).))(((((....)))))))).)))....)))))... ( -33.00, z-score = -1.31, R) >droSim1.chrX 9932072 101 + 17042790 UAAAUGCAGCUCAAGCAAAAGUAUCUUGUACUUGUGUCGAGUAUCUUUU------GCUG-------------UACUGAAAAUUGGACGCACUUUAAGGUGCGGCUGGUGUCGUGAGUAUC ........(((((((((((((...((((.((....))))))...)))))------))).-------------....((..((..(.((((((....)))))).)..)).)).)))))... ( -32.40, z-score = -2.88, R) >consensus UAAAUGCAGCUCAAGCAAAAGUAUCUUGUACUUGUGUCGAGUAUCUUUU______GCUGCCGCCGUGUAAUGUACUGAAAAUUGGACGCACUUUAAGGUGCGGCUGGUGUCGUGAGCAUC ........((((((((...........((((((.....))))))...........)))..................((...(..(.((((((....)))))).)..)..)).)))))... (-16.30 = -17.55 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:20 2011