| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,035,548 – 13,035,638 |
| Length | 90 |
| Max. P | 0.636071 |
| Location | 13,035,548 – 13,035,638 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 66.56 |
| Shannon entropy | 0.60209 |
| G+C content | 0.47712 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -11.42 |
| Energy contribution | -15.74 |
| Covariance contribution | 4.32 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13035548 90 + 22422827 AAUGGCCGUAAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGCUUGGGCUUUUUACUCUUUCGGGGAGAAAGGCCA ...(((((.....((((..((((((..((((...)))))))))))))).....)))))..((((((((.(((.....))).)))))))). ( -30.10, z-score = -1.12, R) >droSim1.chrX 9925182 90 + 17042790 AAUAGCCGUUAAAGAAAAUGCAUUUUCCGGCCAUGCGGAAGUGUUUUCCCUCUCGGUCUGGGCUUUUUACUCUUUCGGGGAGAAAGGCCA ..((((((.....((((((((...(((((......))))))))))))).....))).)))((((((((.(((.....))).)))))))). ( -30.10, z-score = -1.59, R) >droSec1.super_21 787542 90 + 1102487 AAUGGCCGUUAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGUCUGGGCUUUUUAGUCAUUCGGGGAGAAAGGCCA ..(((((......((((..((((((..((((...)))))))))))))).(((((.(....((((....))))...).)))))...))))) ( -29.50, z-score = -1.19, R) >droYak2.chrX 7311251 73 + 21770863 AAUGGCCGUAAAAGAAAAUGCAUUUUCCGGCCAUGCGGAAGUGUUUUCACUU-----------------CUCUUACGGGGAGAAAGGCCA ..(((((......((((((((...(((((......))))))))))))).(((-----------------(((....))))))...))))) ( -27.00, z-score = -3.04, R) >dp4.Unknown_group_804 23339 84 - 58332 AAUAGCUGCAAGCGA---UCUUUUACGAGGCCUUUUCCCUCGAUCCACGGAUUCAGUUCAAG---UUCAGCAGUUCAGAGAGGGAAAGAA ....((.....))(.---.(((....)))..)(((((((((((((....))))..(((....---...)))........))))))))).. ( -17.20, z-score = 0.71, R) >consensus AAUGGCCGUAAAAGAAAAUGCAUUUUCCGGCCAUGCGGAAGUGUUUUCCCUCUCGGUCUGGGCUUUUUACUCUUUCGGGGAGAAAGGCCA ...(((((.....((((((((...(((((......))))))))))))).....)))))..((((((((.(((.....))).)))))))). (-11.42 = -15.74 + 4.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:20 2011