| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,017,363 – 13,017,414 |
| Length | 51 |
| Max. P | 0.600590 |
| Location | 13,017,363 – 13,017,414 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Shannon entropy | 0.30509 |
| G+C content | 0.39545 |
| Mean single sequence MFE | -10.40 |
| Consensus MFE | -8.30 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13017363 51 - 22422827 -------UGUGUAGAAAGACUUGACUAGUCAGUGUCGCUGCCG-AAAGUAAUCAGAAUA -------...((((...(((((((....)))).))).))))(.-...)........... ( -10.30, z-score = -1.10, R) >droSim1.chrX 9906984 51 - 17042790 -------UAUGUAGAAAGACUUGACUAGUCAGUGUCGCUGCCG-AAAGUAAUCAGAAAA -------...((((...(((((((....)))).))).))))(.-...)........... ( -10.30, z-score = -1.55, R) >droSec1.super_21 769172 51 - 1102487 -------UAUGUAGAAAGACUUGACUAGUCAGUGUCGCUGCCG-AAAGUAAUCAGAAAA -------...((((...(((((((....)))).))).))))(.-...)........... ( -10.30, z-score = -1.55, R) >droYak2.chrX 7292962 58 - 21770863 UUUGUAGUAGAAGGAGAGACUUGACUAGUCAGUGUCGUUGCCG-AUAAUAACAUGCAAA .(((((.((...((...(((((((....)))).)))....)).-....))...))))). ( -11.30, z-score = -0.77, R) >droEre2.scaffold_4690 4893460 52 + 18748788 -------UUUGUAGAAAGACUUGACUAGUCAGUGUCGCUGCCGAAAAAUAGCAAGAAAA -------...((((...(((((((....)))).))).)))).................. ( -9.80, z-score = -1.09, R) >consensus _______UAUGUAGAAAGACUUGACUAGUCAGUGUCGCUGCCG_AAAGUAAUCAGAAAA ..........((((...(((((((....)))).))).)))).................. ( -8.30 = -8.38 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:14 2011