Locus 14386

Sequence ID	dm3.chrX
Location	13,015,245 – 13,015,305
Length	60
Max. P	0.589788

overview

Window 7

Location	13,015,245 – 13,015,305
Length	60
Sequences	5
Columns	60
Reading direction	reverse
Mean pairwise identity	68.67
Shannon entropy	0.57742
G+C content	0.45308
Mean single sequence MFE	-11.28
Consensus MFE	-7.94
Energy contribution	-8.50
Covariance contribution	0.56
Combinations/Pair	1.50
Mean z-score	-0.27
Structure conservation index	0.70
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.20
SVM RNA-class probability	0.589788
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13015245 60 - 22422827
AUGGAUACCCAUUCUCAUUCAGAUCUUCGUCUGGCAAACGCUGCAAUGCUAGAUGGUCAA
((((....)))).........((((...((((((((..........)))))))))))).. ( -13.80, z-score =  -0.90, R)
>droSim1.chrX 9904869 60 - 17042790
AUGGAUAGCCACUCUCAUUCAGAUCUUCGUCUGGCAAACGCUGCAAUGCUAGAUGGUCUA
.(((....))).........(((((...((((((((..........))))))))))))). ( -13.90, z-score =  -0.47, R)
>droSec1.super_21 767060 60 - 1102487
AUGGAUAGCCACUCUCAUUCAGAUCUUCGUCUGGCAAACGCUGCAAUGCUAGCUGGUCUA
.....((((((((..(((((((((....)))))(((.....)))))))..)).))).))) ( -12.50, z-score =   0.20, R)
>droEre2.scaffold_4690 4891358 60 + 18748788
GUGGACAACCACUCAAAGUCACAUCUUCAUCUAGCAAACGCUGCAGUGCCACAUGGACCA
((((....)))).....(((.(((...(((.((((....))))..)))....)))))).. ( -11.40, z-score =  -0.25, R)
>anoGam1.chrX 16998731 52 - 22145176
GUAUGUUGAUAUUUUUACU----UUUCUUUCUGCCACCCGCUUUA-UGAAGGAUCGA---
...................----..((((((.((.....))....-.))))))....--- (  -4.80, z-score =   0.06, R)
>consensus
AUGGAUAGCCACUCUCAUUCAGAUCUUCGUCUGGCAAACGCUGCAAUGCUAGAUGGUCUA
((((....))))..............((((((((((..........)))))))))).... ( -7.94 =  -8.50 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:13 2011